Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   BFP66_RS03890 Genome accession   NZ_CP017142
Coordinates   770593..771075 (-) Length   160 a.a.
NCBI ID   WP_029751837.1    Uniprot ID   -
Organism   Streptococcus suis strain GZ0565     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 765593..776075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP66_RS03865 (BFP66_03865) pheT 765749..768148 (+) 2400 WP_063725208.1 phenylalanine--tRNA ligase subunit beta -
  BFP66_RS03870 (BFP66_03870) - 768348..768521 (+) 174 Protein_713 DUF2087 domain-containing protein -
  BFP66_RS03875 (BFP66_03875) - 768647..768949 (-) 303 WP_029751840.1 hypothetical protein -
  BFP66_RS03880 (BFP66_03880) - 769142..769885 (+) 744 WP_029751838.1 polyphosphate polymerase domain-containing protein -
  BFP66_RS03885 (BFP66_03885) - 769872..770549 (+) 678 WP_024407416.1 DUF4956 domain-containing protein -
  BFP66_RS03890 (BFP66_03890) mutX 770593..771075 (-) 483 WP_029751837.1 NUDIX hydrolase Machinery gene
  BFP66_RS03895 (BFP66_03895) folE 771242..771805 (+) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  BFP66_RS03900 (BFP66_03900) folP 771814..772626 (+) 813 WP_029751836.1 dihydropteroate synthase -
  BFP66_RS03905 (BFP66_03905) folB 772619..772981 (+) 363 WP_012027113.1 dihydroneopterin aldolase -
  BFP66_RS03910 (BFP66_03910) folK 772978..773466 (+) 489 WP_024395904.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  BFP66_RS03915 (BFP66_03915) - 773517..774827 (+) 1311 WP_029751835.1 GntP family permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18499.79 Da        Isoelectric Point: 4.4175

>NTDB_id=166795 BFP66_RS03890 WP_029751837.1 770593..771075(-) (mutX) [Streptococcus suis strain GZ0565]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDSLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=166795 BFP66_RS03890 WP_029751837.1 770593..771075(-) (mutX) [Streptococcus suis strain GZ0565]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGTAAACTAGAACCTGGCGAAACACCACAGGCTTGTG
CCATTCGAGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTTTGATCGATTGCAACGAAGGCGA
TTTAGAATGGGTTCCTTATGACCAAGTGCTCTCCAAACCAACTTGGGAAGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGACGGGGATAGCTTGCTGGATTACAGCGTTGATTTTTATGAGGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

80.392

95.625

0.769

Multiple sequence alignment