Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ASL18_RS08610 Genome accession   NZ_CP013959
Coordinates   1712582..1713028 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V605 isolate sequencing     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1707582..1718028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASL18_RS08580 (ASL18_08585) gcvPA 1708508..1709854 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ASL18_RS08585 (ASL18_08590) gcvT 1709874..1710965 (-) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -
  ASL18_RS08590 (ASL18_08595) - 1711124..1711648 (-) 525 WP_001015117.1 shikimate kinase -
  ASL18_RS08595 (ASL18_08600) - 1711638..1711784 (-) 147 WP_001789879.1 hypothetical protein -
  ASL18_RS08600 (ASL18_08605) comGF 1711881..1712378 (-) 498 WP_001803317.1 competence type IV pilus minor pilin ComGF Machinery gene
  ASL18_RS08605 (ASL18_08610) comGE 1712296..1712595 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  ASL18_RS08610 (ASL18_08615) comGD 1712582..1713028 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  ASL18_RS08615 (ASL18_08620) comGC 1713006..1713317 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ASL18_RS08620 (ASL18_08625) comGB 1713331..1714401 (-) 1071 WP_000775706.1 competence type IV pilus assembly protein ComGB Machinery gene
  ASL18_RS08625 (ASL18_08630) comGA 1714373..1715347 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  ASL18_RS08630 (ASL18_08635) - 1715399..1716022 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ASL18_RS08635 (ASL18_08640) - 1716019..1716348 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ASL18_RS08640 (ASL18_08645) - 1716348..1717334 (-) 987 WP_000161314.1 ROK family glucokinase -
  ASL18_RS08645 (ASL18_08650) - 1717331..1717534 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=166703 ASL18_RS08610 WP_001790850.1 1712582..1713028(-) (comGD) [Staphylococcus aureus strain V605 isolate sequencing]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=166703 ASL18_RS08610 WP_001790850.1 1712582..1713028(-) (comGD) [Staphylococcus aureus strain V605 isolate sequencing]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment