Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BS16045_RS21040 Genome accession   NZ_CP017112
Coordinates   4031695..4032384 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain BS16045     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4026695..4037384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS21020 (BS16045_04168) yxeA 4027600..4027947 (-) 348 WP_003227084.1 YxeA family protein -
  BS16045_RS21025 (BS16045_04169) yxdM 4027961..4029829 (-) 1869 WP_003244410.1 ABC transporter permease YxdM -
  BS16045_RS21030 (BS16045_04170) yxdL 4029804..4030577 (-) 774 WP_069323019.1 ABC transporter ATP-binding protein YxdL -
  BS16045_RS21035 (BS16045_04171) yxdK 4030721..4031698 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  BS16045_RS21040 (BS16045_04172) braR 4031695..4032384 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  BS16045_RS21045 (BS16045_04173) iolJ 4032492..4033364 (-) 873 WP_003242766.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  BS16045_RS21050 (BS16045_04174) iolI 4033385..4034221 (-) 837 WP_032730291.1 2-keto-myo-inositol isomerase -
  BS16045_RS21055 (BS16045_04175) iolH 4034307..4035176 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase family protein -
  BS16045_RS21060 (BS16045_04176) iolG 4035196..4036230 (-) 1035 WP_032730288.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=166653 BS16045_RS21040 WP_003243527.1 4031695..4032384(-) (braR) [Bacillus subtilis strain BS16045]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=166653 BS16045_RS21040 WP_003243527.1 4031695..4032384(-) (braR) [Bacillus subtilis strain BS16045]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGTGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406