Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BS16045_RS19465 Genome accession   NZ_CP017112
Coordinates   3728904..3730037 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain BS16045     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723904..3735037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS19430 (BS16045_03852) ywnA 3724070..3724471 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  BS16045_RS19435 (BS16045_03853) ureC 3724606..3726315 (-) 1710 WP_069322961.1 urease subunit alpha -
  BS16045_RS19440 (BS16045_03854) ureB 3726312..3726686 (-) 375 WP_041850426.1 urease subunit beta -
  BS16045_RS19445 (BS16045_03855) ureA 3726683..3727000 (-) 318 WP_003227724.1 urease subunit gamma -
  BS16045_RS22520 (BS16045_03856) - 3727195..3727353 (-) 159 WP_120363539.1 hypothetical protein -
  BS16045_RS22950 - 3727526..3727708 (-) 183 WP_069322962.1 transporter substrate-binding protein -
  BS16045_RS19455 (BS16045_03857) csbD 3728009..3728196 (-) 188 Protein_3781 stress response protein CsbD -
  BS16045_RS19460 (BS16045_03858) - 3728269..3728748 (-) 480 WP_069323078.1 hypothetical protein -
  BS16045_RS19465 (BS16045_03859) rapC 3728904..3730037 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  BS16045_RS19470 (BS16045_03860) moaA 3730230..3731255 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  BS16045_RS19475 (BS16045_03861) fdhD 3731271..3732059 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  BS16045_RS19480 (BS16045_03862) - 3732292..3732453 (-) 162 WP_003227706.1 hypothetical protein -
  BS16045_RS19485 (BS16045_03863) ywmD 3732548..3733222 (-) 675 WP_003243553.1 vWA domain-containing protein -
  BS16045_RS22525 - 3733275..3733415 (-) 141 WP_003227702.1 hypothetical protein -
  BS16045_RS19495 (BS16045_03864) ywmC 3733546..3734229 (-) 684 WP_019712592.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=166646 BS16045_RS19465 WP_003227715.1 3728904..3730037(-) (rapC) [Bacillus subtilis strain BS16045]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=166646 BS16045_RS19465 WP_003227715.1 3728904..3730037(-) (rapC) [Bacillus subtilis strain BS16045]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424