Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BS16045_RS03785 Genome accession   NZ_CP017112
Coordinates   728166..729296 (+) Length   376 a.a.
NCBI ID   WP_033885033.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS16045     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 723166..734296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS21820 - 723290..723761 (-) 472 Protein_684 antitoxin YezG family protein -
  BS16045_RS03765 (BS16045_00737) - 723796..724257 (-) 462 WP_064671869.1 antitoxin YezG family protein -
  BS16045_RS03770 (BS16045_00738) - 724274..724762 (-) 489 WP_064671935.1 immunity protein YezG family protein -
  BS16045_RS03775 (BS16045_00739) dtxF 724769..726778 (-) 2010 WP_064671870.1 T7SS effector LXG polymorphic toxin -
  BS16045_RS03780 (BS16045_00740) - 726991..728013 (+) 1023 WP_003243884.1 hypothetical protein -
  BS16045_RS03785 (BS16045_00741) rapC 728166..729296 (+) 1131 WP_033885033.1 response regulator aspartate phosphatase RapH Regulator
  BS16045_RS03790 (BS16045_00742) phrH 729286..729459 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  BS16045_RS03795 (BS16045_00743) yeeI 729619..730338 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BS16045_RS03800 (BS16045_00744) yeeK 730472..730942 (+) 471 WP_080479519.1 spore coat protein YeeK -
  BS16045_RS03805 (BS16045_00745) yezE 731057..731641 (+) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  BS16045_RS03810 (BS16045_00746) yesE 731720..732163 (+) 444 WP_069322440.1 nuclear transport factor 2 family protein -
  BS16045_RS03815 (BS16045_00747) yesF 732160..733008 (+) 849 WP_021481271.1 NAD-dependent epimerase/dehydratase family protein -
  BS16045_RS03820 (BS16045_00748) cotJA 733155..733403 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  BS16045_RS03825 (BS16045_00749) cotJB 733387..733650 (+) 264 WP_003219491.1 spore coat protein CotJB -
  BS16045_RS03830 (BS16045_00750) cotJC 733665..734234 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43933.13 Da        Isoelectric Point: 5.7144

>NTDB_id=166536 BS16045_RS03785 WP_033885033.1 728166..729296(+) (rapC) [Bacillus subtilis strain BS16045]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALDLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=166536 BS16045_RS03785 WP_033885033.1 728166..729296(+) (rapC) [Bacillus subtilis strain BS16045]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAAATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTAGATTTGGCAACGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402