Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BS16045_RS02985 Genome accession   NZ_CP017112
Coordinates   567423..568064 (+) Length   213 a.a.
NCBI ID   WP_003234184.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS16045     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 562423..573064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS02960 (BS16045_00582) ydfE 563612..564235 (-) 624 WP_069322402.1 flavin reductase family protein -
  BS16045_RS02965 (BS16045_00583) ydfF 564325..565005 (+) 681 WP_003244115.1 ArsR/SmtB family transcription factor -
  BS16045_RS02970 (BS16045_00584) ydfG 565085..565528 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  BS16045_RS21795 (BS16045_00585) - 565614..565793 (-) 180 WP_010886421.1 hypothetical protein -
  BS16045_RS02975 - 565790..565939 (-) 150 WP_003234189.1 hypothetical protein -
  BS16045_RS02980 (BS16045_00586) ydfH 566207..567430 (+) 1224 WP_080479513.1 two-component system sensor histidine kinase YdfH -
  BS16045_RS02985 (BS16045_00587) vraR 567423..568064 (+) 642 WP_003234184.1 two-component system response regulator YdfI Regulator
  BS16045_RS02990 (BS16045_00588) pleJ 568180..570354 (+) 2175 WP_069322404.1 MMPL family transporter -
  BS16045_RS02995 (BS16045_00589) cesA 570767..571669 (-) 903 WP_015715308.1 carboxylesterase -
  BS16045_RS03000 (BS16045_00590) ydfK 571872..572561 (-) 690 WP_015252719.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23985.98 Da        Isoelectric Point: 5.4183

>NTDB_id=166530 BS16045_RS02985 WP_003234184.1 567423..568064(+) (vraR) [Bacillus subtilis strain BS16045]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDIPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=166530 BS16045_RS02985 WP_003234184.1 567423..568064(+) (vraR) [Bacillus subtilis strain BS16045]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATATCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAATGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.493

99.061

0.362