Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BS16045_RS02445 Genome accession   NZ_CP017112
Coordinates   475508..475942 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain BS16045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470508..480942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS02415 (BS16045_00475) ydaD 471157..472017 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  BS16045_RS02420 (BS16045_00476) lyxE 472033..472536 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  BS16045_RS02425 (BS16045_00477) ydaF 472622..473173 (+) 552 WP_029317311.1 GNAT family N-acetyltransferase -
  BS16045_RS02430 (BS16045_00478) ydaG 473251..473673 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  BS16045_RS02435 (BS16045_00479) amj 474179..474988 (+) 810 WP_029317312.1 lipid II flippase Amj -
  BS16045_RS02440 (BS16045_00480) ydzA 475033..475323 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  BS16045_RS02445 (BS16045_00481) lrpC 475508..475942 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  BS16045_RS02450 (BS16045_00482) topB 476007..478190 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  BS16045_RS02455 (BS16045_00483) ephJ 478393..479481 (+) 1089 WP_029317314.1 hypothetical protein -
  BS16045_RS02460 (BS16045_00484) epsK 479462..480313 (+) 852 WP_015252791.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=166529 BS16045_RS02445 WP_003246585.1 475508..475942(+) (lrpC) [Bacillus subtilis strain BS16045]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=166529 BS16045_RS02445 WP_003246585.1 475508..475942(+) (lrpC) [Bacillus subtilis strain BS16045]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCTCCACCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment