Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BS16045_RS00335 Genome accession   NZ_CP017112
Coordinates   59734..59964 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain BS16045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54734..64964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS00300 (BS16045_00059) ridA 54898..55275 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BS16045_RS00305 (BS16045_00060) spoVG 55470..55763 (+) 294 WP_003218346.1 septation regulator SpoVG -
  BS16045_RS00315 (BS16045_00061) glmU 55956..57326 (+) 1371 WP_029317168.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BS16045_RS00320 (BS16045_00062) prsS 57349..58302 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  BS16045_RS00325 (BS16045_00063) rplYB 58387..59001 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  BS16045_RS00330 (BS16045_00064) pth 59108..59674 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  BS16045_RS00335 (BS16045_00065) subA/fin 59734..59964 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  BS16045_RS00340 (BS16045_00066) mfd 60034..63567 (+) 3534 WP_069322313.1 transcription-repair coupling factor -
  BS16045_RS00345 (BS16045_00067) spoVT 63703..64239 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=166512 BS16045_RS00335 WP_003243417.1 59734..59964(+) (subA/fin) [Bacillus subtilis strain BS16045]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=166512 BS16045_RS00335 WP_003243417.1 59734..59964(+) (subA/fin) [Bacillus subtilis strain BS16045]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment