Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AUL54_RS10740 Genome accession   NZ_CP013950
Coordinates   2240965..2242077 (-) Length   370 a.a.
NCBI ID   WP_060963790.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2235965..2247077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS10725 (AUL54_10735) gyrA 2236053..2238512 (-) 2460 WP_060963789.1 DNA gyrase subunit A -
  AUL54_RS10730 (AUL54_10740) gyrB 2238729..2240645 (-) 1917 WP_060965087.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AUL54_RS10735 (AUL54_10745) - 2240702..2240947 (-) 246 WP_004392908.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  AUL54_RS10740 (AUL54_10750) recF 2240965..2242077 (-) 1113 WP_060963790.1 DNA replication/repair protein RecF Machinery gene
  AUL54_RS10745 (AUL54_10755) rlbA 2242093..2242308 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  AUL54_RS10750 (AUL54_10760) dnaN 2242445..2243581 (-) 1137 WP_060963791.1 DNA polymerase III subunit beta -
  AUL54_RS10755 (AUL54_10765) dnaA 2243766..2245106 (-) 1341 WP_016937312.1 chromosomal replication initiator protein DnaA -
  AUL54_RS20705 rpmH 2245726..2245860 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  AUL54_RS10760 (AUL54_10770) rnpA 2246014..2246364 (+) 351 WP_016937314.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42472.40 Da        Isoelectric Point: 6.8976

>NTDB_id=166476 AUL54_RS10740 WP_060963790.1 2240965..2242077(-) (recF) [Bacillus sp. SDLI1]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTEQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=166476 AUL54_RS10740 WP_060963790.1 2240965..2242077(-) (recF) [Bacillus sp. SDLI1]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGAGAGAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGTTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCACATAGAACAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTCGCCCCGGAGGACTTAAATCTCGTCAAAGGCAGCCCGCAGGTCAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
GGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGAGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGCA
TTTCCCGGGGGCTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCTAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGGGGCGTCACCTTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATTGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGACGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment