Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AUL54_RS10510 Genome accession   NZ_CP013950
Coordinates   2199200..2199490 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2194200..2204490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS10495 (AUL54_10500) - 2194422..2195747 (-) 1326 WP_101605623.1 G5 and 3D domain-containing protein -
  AUL54_RS10500 (AUL54_10505) - 2195882..2196649 (-) 768 WP_060963776.1 TatD family hydrolase -
  AUL54_RS10505 (AUL54_10510) metG 2196725..2198716 (-) 1992 WP_060963777.1 methionine--tRNA ligase -
  AUL54_RS10510 (AUL54_10515) abrB 2199200..2199490 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  AUL54_RS10515 (AUL54_10520) rsmI 2199540..2200421 (-) 882 WP_060963778.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AUL54_RS10520 (AUL54_10525) - 2200396..2200695 (-) 300 WP_047478056.1 GIY-YIG nuclease family protein -
  AUL54_RS10525 (AUL54_10530) - 2200682..2201425 (-) 744 WP_049627760.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AUL54_RS10530 (AUL54_10535) yabA 2201486..2201845 (-) 360 WP_016936514.1 replication initiation-control protein YabA -
  AUL54_RS10535 (AUL54_10540) ricT 2201860..2202687 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  AUL54_RS10540 (AUL54_10545) holB 2202690..2203679 (-) 990 WP_060963779.1 DNA polymerase III subunit delta' -
  AUL54_RS10545 (AUL54_10550) - 2203691..2204131 (-) 441 WP_047478049.1 DUF327 family protein -
  AUL54_RS10550 (AUL54_10555) darA 2204144..2204473 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=166474 AUL54_RS10510 WP_169510469.1 2199200..2199490(+) (abrB) [Bacillus sp. SDLI1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=166474 AUL54_RS10510 WP_169510469.1 2199200..2199490(+) (abrB) [Bacillus sp. SDLI1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAATCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment