Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | NEB5A_RS13555 | Genome accession | NZ_CP017100 |
| Coordinates | 2716994..2717476 (+) | Length | 160 a.a. |
| NCBI ID | WP_001407480.1 | Uniprot ID | P52140 |
| Organism | Escherichia coli strain K-12 NEB 5-alpha | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2711994..2722476
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NEB5A_RS25755 | - | 2712610..2712762 (-) | 153 | Protein_2614 | glutaredoxin domain-containing protein | - |
| NEB5A_RS13540 (NEB5A_13540) | - | 2712775..2713784 (-) | 1010 | Protein_2615 | arsenic transporter | - |
| NEB5A_RS13545 (NEB5A_13545) | yfjW | 2713926..2715629 (+) | 1704 | WP_000896263.1 | protein YfjW | - |
| NEB5A_RS23760 | - | 2716201..2716424 (+) | 224 | Protein_2617 | DUF905 family protein | - |
| NEB5A_RS13550 (NEB5A_13550) | yfjX | 2716527..2716985 (+) | 459 | WP_000211841.1 | antirestriction protein | - |
| NEB5A_RS13555 (NEB5A_13555) | radC | 2716994..2717476 (+) | 483 | WP_001407480.1 | RadC family protein | Machinery gene |
| NEB5A_RS23765 | ypjJ | 2717485..2717685 (+) | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| NEB5A_RS13560 (NEB5A_13560) | yfjZ | 2717723..2718040 (+) | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| NEB5A_RS13565 (NEB5A_13565) | ypjF | 2718061..2718390 (+) | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 17963.75 Da Isoelectric Point: 8.6079
>NTDB_id=166464 NEB5A_RS13555 WP_001407480.1 2716994..2717476(+) (radC) [Escherichia coli strain K-12 NEB 5-alpha]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL
Nucleotide
Download Length: 483 bp
>NTDB_id=166464 NEB5A_RS13555 WP_001407480.1 2716994..2717476(+) (radC) [Escherichia coli strain K-12 NEB 5-alpha]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
57.692 |
65 |
0.375 |