Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   AUL54_RS04970 Genome accession   NZ_CP013950
Coordinates   1107880..1108833 (-) Length   317 a.a.
NCBI ID   WP_060963098.1    Uniprot ID   A0AAI8HQ13
Organism   Bacillus sp. SDLI1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102880..1113833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS04940 (AUL54_04945) - 1103009..1103995 (-) 987 WP_060963094.1 ABC transporter ATP-binding protein -
  AUL54_RS04945 (AUL54_04950) - 1104168..1104953 (-) 786 WP_060963095.1 DUF2268 domain-containing protein -
  AUL54_RS04950 (AUL54_04955) fabF 1105038..1106276 (-) 1239 WP_060965052.1 beta-ketoacyl-ACP synthase II -
  AUL54_RS04955 (AUL54_04960) - 1106300..1107238 (-) 939 WP_060963096.1 beta-ketoacyl-ACP synthase III -
  AUL54_RS04960 (AUL54_04965) - 1107404..1107646 (+) 243 WP_060963097.1 hypothetical protein -
  AUL54_RS04965 (AUL54_04970) comZ 1107676..1107867 (-) 192 WP_003155061.1 ComZ family protein Regulator
  AUL54_RS04970 (AUL54_04975) med 1107880..1108833 (-) 954 WP_060963098.1 BMP family ABC transporter substrate-binding protein Regulator
  AUL54_RS04975 (AUL54_04980) - 1108922..1109488 (-) 567 WP_060963099.1 hypothetical protein -
  AUL54_RS04980 (AUL54_04985) - 1109571..1110304 (-) 734 Protein_1029 hypothetical protein -
  AUL54_RS04985 (AUL54_04990) - 1110566..1110751 (+) 186 WP_016938251.1 YjzD family protein -
  AUL54_RS04990 (AUL54_04995) - 1110788..1110967 (-) 180 WP_016938252.1 YjzC family protein -
  AUL54_RS04995 (AUL54_05000) argF 1111044..1112015 (-) 972 WP_060963100.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35300.98 Da        Isoelectric Point: 4.7229

>NTDB_id=166456 AUL54_RS04970 WP_060963098.1 1107880..1108833(-) (med) [Bacillus sp. SDLI1]
MITRLVMVFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
LHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKNDNVISVHLIGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYKKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTIIAEQYNNGTLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=166456 AUL54_RS04970 WP_060963098.1 1107880..1108833(-) (med) [Bacillus sp. SDLI1]
TTGATCACCAGGCTTGTCATGGTCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGGAAAAT
TGAGAAGGTCGGAATGCTGTTTCCCGATACCATCAGTGACCTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCTGATGAAGATATTTTAAAAGCGATAGATGAT
TTGCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGTAAGGATTA
TCCCGACATGGAATTCGTCGTCGCTAACGGAACGGCGAAAAACGATAATGTCATAAGCGTTCATCTTATAGGAGAAGCGA
TGGGCTTTTTTGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCGTTTTTATGGCAG
CCTGAGGTAGACGGCTTTATTAAAGGGGCAAAATATGAAAAGCCCGATATTACCGTCAATACTGAATTTACGGACCATTG
GGATAACGGCAATGAAGCACTGCATCTTTATAAGAAGTTAAAAGCAGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATTAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAACCTC
GGCAAAAACACGGTGCTGACAAGCACCGTGCAAAATGTAGACAAAGCCTATACAATAATCGCCGAGCAATATAATAACGG
CACGCTCAAGAGCGGAGATCACAACTTCGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTAAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

77.603

100

0.776

Multiple sequence alignment