Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AUL54_RS03540 Genome accession   NZ_CP013950
Coordinates   833181..833777 (-) Length   198 a.a.
NCBI ID   WP_060962909.1    Uniprot ID   A0AAI8MZ25
Organism   Bacillus sp. SDLI1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 828181..838777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS03515 (AUL54_03515) mobB 828575..829096 (-) 522 WP_060962904.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AUL54_RS03520 (AUL54_03520) glp 829057..830349 (-) 1293 WP_060962905.1 gephyrin-like molybdotransferase Glp -
  AUL54_RS03525 (AUL54_03525) - 830367..831386 (-) 1020 WP_060962906.1 MoeB/ThiF family adenylyltransferase -
  AUL54_RS03530 (AUL54_03530) - 831438..832040 (-) 603 WP_060962907.1 molybdenum cofactor guanylyltransferase -
  AUL54_RS03535 (AUL54_03535) - 832185..833156 (+) 972 WP_060962908.1 hypothetical protein -
  AUL54_RS03540 (AUL54_03540) rok 833181..833777 (-) 597 WP_060962909.1 transcriptional regulator Rok Regulator
  AUL54_RS03545 (AUL54_03545) - 834246..834704 (-) 459 WP_060962910.1 TlpA disulfide reductase family protein -
  AUL54_RS03550 (AUL54_03550) - 835000..835806 (+) 807 WP_060962911.1 mechanosensitive ion channel family protein -
  AUL54_RS03555 (AUL54_03555) - 835840..836085 (-) 246 WP_013352084.1 YkuS family protein -
  AUL54_RS03560 (AUL54_03560) - 836146..837270 (-) 1125 WP_060962912.1 N-acetyldiaminopimelate deacetylase -
  AUL54_RS03565 (AUL54_03565) dapD 837341..838051 (-) 711 WP_060962913.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AUL54_RS03570 (AUL54_03570) - 838133..838588 (-) 456 WP_060962914.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22573.57 Da        Isoelectric Point: 9.4832

>NTDB_id=166447 AUL54_RS03540 WP_060962909.1 833181..833777(-) (rok) [Bacillus sp. SDLI1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQSQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETEETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=166447 AUL54_RS03540 WP_060962909.1 833181..833777(-) (rok) [Bacillus sp. SDLI1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAGGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCAGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTACCAAAAGCCGCAG
ACACAGCCTCAATCCTCACAGTCGCAAATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCGGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCAAGACCGGGTTCAAAAGCGGCAAAACTGCGCGAAGCAGCCATTAAAACATTGAAGCGCCACAATG
CGGCGATCAAAAGTTCGGAGCTGCAAAAGGAAATTGAGAAGGAAAGCGGCCTTGAAATCCCTAATATGACAACGTTTATG
CAAAGTTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGAAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

87.113

97.98

0.854

Multiple sequence alignment