Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AUL54_RS03430 Genome accession   NZ_CP013950
Coordinates   812991..813275 (-) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus sp. SDLI1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 807991..818275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS03410 (AUL54_03410) ade 808097..809830 (-) 1734 WP_060962893.1 adenine deaminase -
  AUL54_RS03415 (AUL54_03415) ktrC 809980..810645 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  AUL54_RS03420 (AUL54_03420) - 810686..811513 (-) 828 WP_082761601.1 gamma-glutamylcyclotransferase -
  AUL54_RS03425 (AUL54_03425) - 811515..812819 (-) 1305 WP_060962895.1 ATP-binding protein -
  AUL54_RS03430 (AUL54_03430) abrB 812991..813275 (-) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AUL54_RS03440 (AUL54_03440) mreBH 813546..814553 (+) 1008 WP_029575211.1 cell shape-determining protein MreBH -
  AUL54_RS21055 - 814625..814759 (+) 135 WP_101605501.1 protein YkpC -
  AUL54_RS03445 (AUL54_03445) - 814860..816092 (+) 1233 WP_060962896.1 aminopeptidase -
  AUL54_RS03450 (AUL54_03450) - 816122..817030 (-) 909 WP_060962897.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=166446 AUL54_RS03430 WP_013352109.1 812991..813275(-) (abrB) [Bacillus sp. SDLI1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=166446 AUL54_RS03430 WP_013352109.1 812991..813275(-) (abrB) [Bacillus sp. SDLI1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTTGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAACCGCACGGCATTT
GCTTAATGACCGGAGAAATTACCCCCGACAATCAGGAATACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553

Multiple sequence alignment