Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AUL54_RS01985 Genome accession   NZ_CP013950
Coordinates   415695..416066 (-) Length   123 a.a.
NCBI ID   WP_231937532.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 410695..421066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS01950 (AUL54_01950) - 410731..411084 (+) 354 WP_016936029.1 multidrug efflux SMR transporter -
  AUL54_RS01955 (AUL54_01955) - 411098..411550 (-) 453 WP_060962728.1 OsmC family protein -
  AUL54_RS01960 (AUL54_01960) - 411610..412317 (-) 708 WP_060962729.1 poly-gamma-glutamate hydrolase family protein -
  AUL54_RS01965 (AUL54_01965) - 412573..412806 (-) 234 WP_060962730.1 hypothetical protein -
  AUL54_RS01970 (AUL54_01970) - 412971..414299 (+) 1329 WP_060962731.1 S8 family peptidase -
  AUL54_RS01975 (AUL54_01975) - 414482..414844 (+) 363 WP_016936035.1 hypothetical protein -
  AUL54_RS01980 (AUL54_01980) - 414879..415634 (-) 756 WP_060962732.1 YoaK family protein -
  AUL54_RS01985 (AUL54_01985) nucA/comI 415695..416066 (-) 372 WP_231937532.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AUL54_RS01990 (AUL54_01990) - 416412..417623 (+) 1212 WP_060962734.1 cytochrome P450 -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13395.87 Da        Isoelectric Point: 6.7105

>NTDB_id=166441 AUL54_RS01985 WP_231937532.1 415695..416066(-) (nucA/comI) [Bacillus sp. SDLI1]
MSAGTHSENTARAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEDRRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSRYSDGTKVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=166441 AUL54_RS01985 WP_231937532.1 415695..416066(-) (nucA/comI) [Bacillus sp. SDLI1]
ATGAGCGCCGGGACTCATTCTGAGAATACTGCCCGAGCCGCGTCCAGATACGATCAGGTGCTTTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGGCACTCTGACATTTGTACAATTGATCGCGGCGGAG
CTGAGGATAGAAGGAAAGAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCGATGGCAGTC
TGTACAGAAGGCGGGGCTGGAGCTGATATCAGATATGTAACCCCTTCGGACAATCGCGGGGCCGGCTCATGGGTTGGAAA
TCAAATGAGCAGGTATTCCGACGGCACGAAAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.963

87.805

0.553

Multiple sequence alignment