Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SE1UMMC_RS03230 | Genome accession | NZ_CP013943 |
| Coordinates | 618696..619124 (+) | Length | 142 a.a. |
| NCBI ID | WP_101750502.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain DAR1907 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 613696..624124
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE1UMMC_RS03180 (SE1UMMC_02950) | - | 614241..614699 (-) | 459 | WP_002504200.1 | ImmA/IrrE family metallo-endopeptidase | - |
| SE1UMMC_RS03185 (SE1UMMC_02955) | - | 614721..615035 (-) | 315 | WP_002504199.1 | helix-turn-helix domain-containing protein | - |
| SE1UMMC_RS03190 (SE1UMMC_02960) | - | 615188..615400 (+) | 213 | WP_101750500.1 | helix-turn-helix transcriptional regulator | - |
| SE1UMMC_RS13910 | - | 615444..615584 (+) | 141 | WP_002485815.1 | hypothetical protein | - |
| SE1UMMC_RS03195 (SE1UMMC_02965) | - | 615577..615801 (-) | 225 | WP_002504198.1 | hypothetical protein | - |
| SE1UMMC_RS03200 (SE1UMMC_02970) | - | 615851..616591 (+) | 741 | WP_002504197.1 | phage repressor protein | - |
| SE1UMMC_RS03205 (SE1UMMC_02975) | - | 616604..616813 (+) | 210 | WP_001830281.1 | hypothetical protein | - |
| SE1UMMC_RS13915 | - | 616827..616973 (+) | 147 | WP_002484748.1 | hypothetical protein | - |
| SE1UMMC_RS03210 (SE1UMMC_02980) | - | 616960..617238 (-) | 279 | WP_002484728.1 | hypothetical protein | - |
| SE1UMMC_RS13920 | - | 617333..617509 (+) | 177 | WP_199559955.1 | hypothetical protein | - |
| SE1UMMC_RS03215 (SE1UMMC_02985) | - | 617571..617840 (+) | 270 | WP_101750501.1 | chordopoxvirus fusion protein | - |
| SE1UMMC_RS03220 (SE1UMMC_02990) | - | 617818..618069 (+) | 252 | WP_002485808.1 | hypothetical protein | - |
| SE1UMMC_RS03225 (SE1UMMC_02995) | - | 618062..618706 (+) | 645 | WP_002485844.1 | DUF1071 domain-containing protein | - |
| SE1UMMC_RS03230 (SE1UMMC_03000) | ssbA | 618696..619124 (+) | 429 | WP_101750502.1 | single-stranded DNA-binding protein | Machinery gene |
| SE1UMMC_RS03235 (SE1UMMC_03005) | - | 619138..619812 (+) | 675 | WP_002485820.1 | putative HNHc nuclease | - |
| SE1UMMC_RS03240 (SE1UMMC_03010) | - | 619964..620665 (+) | 702 | WP_101750503.1 | helix-turn-helix domain-containing protein | - |
| SE1UMMC_RS03245 (SE1UMMC_03015) | - | 620671..621024 (+) | 354 | WP_101750504.1 | hypothetical protein | - |
| SE1UMMC_RS03250 (SE1UMMC_03020) | - | 621014..622261 (+) | 1248 | WP_001830247.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| SE1UMMC_RS03255 (SE1UMMC_03025) | - | 622258..622479 (+) | 222 | WP_001830239.1 | hypothetical protein | - |
| SE1UMMC_RS03260 (SE1UMMC_03030) | - | 622457..622702 (+) | 246 | WP_002469496.1 | hypothetical protein | - |
| SE1UMMC_RS03265 (SE1UMMC_03035) | - | 622712..623125 (+) | 414 | WP_002469467.1 | DUF1064 domain-containing protein | - |
| SE1UMMC_RS03270 (SE1UMMC_03040) | - | 623112..623576 (+) | 465 | WP_002469486.1 | hypothetical protein | - |
| SE1UMMC_RS03275 (SE1UMMC_03045) | - | 623528..623719 (+) | 192 | WP_002469484.1 | hypothetical protein | - |
| SE1UMMC_RS03280 (SE1UMMC_03050) | - | 623720..624079 (+) | 360 | WP_101750505.1 | SA1788 family PVL leukocidin-associated protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15889.63 Da Isoelectric Point: 9.6205
>NTDB_id=166390 SE1UMMC_RS03230 WP_101750502.1 618696..619124(+) (ssbA) [Staphylococcus epidermidis strain DAR1907]
MLNRVVLVGRLTKDPEFRTTPSGVEVATFTLAVNRTFTNAQGEREADFINVVVFRKQAKNVNDYLSKGSLAGVDGRVQSR
SYENQEGRRVFVTEVVADSVQFLDTKGNNQQNNQPQKQQKQTTTKNNPFANGTDMDSSELPF
MLNRVVLVGRLTKDPEFRTTPSGVEVATFTLAVNRTFTNAQGEREADFINVVVFRKQAKNVNDYLSKGSLAGVDGRVQSR
SYENQEGRRVFVTEVVADSVQFLDTKGNNQQNNQPQKQQKQTTTKNNPFANGTDMDSSELPF
Nucleotide
Download Length: 429 bp
>NTDB_id=166390 SE1UMMC_RS03230 WP_101750502.1 618696..619124(+) (ssbA) [Staphylococcus epidermidis strain DAR1907]
ATGTTAAATAGAGTTGTATTAGTAGGAAGATTAACGAAAGATCCAGAGTTTAGAACTACGCCGAGTGGAGTTGAAGTAGC
GACATTCACATTAGCAGTAAACAGAACATTTACTAACGCACAAGGTGAACGAGAAGCAGATTTCATCAATGTAGTTGTAT
TCAGAAAACAAGCGAAGAATGTAAACGATTATCTTTCAAAAGGTTCACTAGCAGGTGTAGATGGACGTGTTCAATCACGC
AGCTATGAAAATCAAGAAGGTCGTCGAGTATTTGTAACAGAAGTTGTGGCCGATAGCGTTCAGTTCTTAGATACCAAAGG
CAACAACCAACAAAACAACCAACCTCAAAAGCAACAAAAACAAACCACAACTAAAAATAATCCTTTTGCTAACGGTACAG
ACATGGATAGTTCAGAATTGCCGTTCTGA
ATGTTAAATAGAGTTGTATTAGTAGGAAGATTAACGAAAGATCCAGAGTTTAGAACTACGCCGAGTGGAGTTGAAGTAGC
GACATTCACATTAGCAGTAAACAGAACATTTACTAACGCACAAGGTGAACGAGAAGCAGATTTCATCAATGTAGTTGTAT
TCAGAAAACAAGCGAAGAATGTAAACGATTATCTTTCAAAAGGTTCACTAGCAGGTGTAGATGGACGTGTTCAATCACGC
AGCTATGAAAATCAAGAAGGTCGTCGAGTATTTGTAACAGAAGTTGTGGCCGATAGCGTTCAGTTCTTAGATACCAAAGG
CAACAACCAACAAAACAACCAACCTCAAAAGCAACAAAAACAAACCACAACTAAAAATAATCCTTTTGCTAACGGTACAG
ACATGGATAGTTCAGAATTGCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.714 |
100 |
0.662 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.471 |
100 |
0.556 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
74.648 |
0.451 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40.278 |
100 |
0.408 |
| ssbA | Streptococcus mutans UA159 |
38.732 |
100 |
0.387 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
36.111 |
100 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
36.111 |
100 |
0.366 |