Detailed information NTG0166369

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BG483_RS14110
• Genome accession: NZ_CP017099
• Coordinates: 2948414..2949418 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain DN1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2943414..2954418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BG483_RS14090 (BG483_13535)	-	2943897..2944904 (+)	1008	WP_021265158.1	TolB family protein	-
BG483_RS14100 (BG483_13540)	mutS	2945030..2947597 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
BG483_RS14105 (BG483_13545)	fdxA	2947664..2947987 (+)	324	WP_003092272.1	ferredoxin FdxA	-
BG483_RS14110 (BG483_13550)	rpoS	2948414..2949418 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
BG483_RS14115 (BG483_13555)	-	2949523..2950416 (-)	894	WP_021265159.1	peptidoglycan DD-metalloendopeptidase family protein	-
BG483_RS14120 (BG483_13560)	-	2950462..2951097 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BG483_RS14125 (BG483_13565)	surE	2951130..2951879 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
BG483_RS14130 (BG483_13570)	truD	2951867..2952934 (-)	1068	WP_023100864.1	tRNA pseudouridine(13) synthase TruD	-
BG483_RS14135 (BG483_13575)	ispF	2952931..2953404 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BG483_RS14140 (BG483_13580)	fghA	2953475..2954326 (-)	852	WP_003163269.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=166369 BG483_RS14110 WP_003113871.1 2948414..2949418(-) (rpoS) [Pseudomonas aeruginosa strain DN1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=166369 BG483_RS14110 WP_003113871.1 2948414..2949418(-) (rpoS) [Pseudomonas aeruginosa strain DN1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653