Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AVT04_RS06965 Genome accession   NZ_CP013939
Coordinates   1294591..1295322 (+) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain S9     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289591..1300322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS06940 (AVT04_06940) - 1289726..1291825 (+) 2100 WP_059257388.1 ATP-dependent Clp protease ATP-binding subunit -
  AVT04_RS11415 - 1292231..1292356 (+) 126 WP_011681534.1 hypothetical protein -
  AVT04_RS06945 (AVT04_06945) - 1292375..1293010 (+) 636 WP_011226440.1 DUF4230 domain-containing protein -
  AVT04_RS11245 - 1293080..1293250 (+) 171 WP_011226439.1 hypothetical protein -
  AVT04_RS06955 (AVT04_06955) - 1293802..1294110 (-) 309 WP_011227487.1 hypothetical protein -
  AVT04_RS06960 (AVT04_06960) - 1294107..1294526 (-) 420 WP_011227486.1 HIT family protein -
  AVT04_RS06965 (AVT04_06965) pptA 1294591..1295322 (+) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  AVT04_RS06970 (AVT04_06970) pptB 1295322..1296356 (+) 1035 WP_373867015.1 ABC transporter permease Regulator
  AVT04_RS06975 (AVT04_06975) ccrZ 1296414..1297205 (+) 792 WP_002951667.1 cell cycle regulator CcrZ -
  AVT04_RS06980 (AVT04_06980) trmB 1297215..1297856 (+) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  AVT04_RS06990 (AVT04_06990) - 1298092..1299273 (-) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=166345 AVT04_RS06965 WP_002951673.1 1294591..1295322(+) (pptA) [Streptococcus thermophilus strain S9]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=166345 AVT04_RS06965 WP_002951673.1 1294591..1295322(+) (pptA) [Streptococcus thermophilus strain S9]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTATGCCAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGCGCCTTTATTGTCAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment