Detailed information NTG0166339

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: AVT04_RS05855
• Genome accession: NZ_CP013939
• Coordinates: 1080595..1080987 (+)
• Length: 130 a.a.
• NCBI ID: WP_011227579.1
• Uniprot ID: A0A2S4DWC9
• Organism: Streptococcus thermophilus strain S9
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1075595..1085987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVT04_RS05820 (AVT04_05820)	proC	1075798..1076568 (-)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-
AVT04_RS05825 (AVT04_05825)	pepA	1076584..1077651 (-)	1068	WP_002952022.1	glutamyl aminopeptidase	-
AVT04_RS05830 (AVT04_05830)	-	1077751..1078035 (+)	285	WP_041827106.1	DUF4651 domain-containing protein	-
AVT04_RS05835 (AVT04_05835)	-	1078032..1078346 (+)	315	WP_011226613.1	thioredoxin family protein	-
AVT04_RS05840 (AVT04_05840)	ytpR	1078356..1078979 (+)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
AVT04_RS05845 (AVT04_05845)	-	1079117..1080148 (+)	1032	WP_011227580.1	YeeE/YedE family protein	-
AVT04_RS05850 (AVT04_05850)	-	1080163..1080390 (+)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
AVT04_RS05855 (AVT04_05855)	ssbA	1080595..1080987 (+)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
AVT04_RS05860 (AVT04_05860)	tadA	1081747..1082265 (+)	519	WP_011227578.1	tRNA adenosine(34) deaminase TadA	-
AVT04_RS11495 (AVT04_05865)	-	1082373..1082609 (-)	237	WP_041827105.1	hypothetical protein	-
AVT04_RS05870 (AVT04_05870)	-	1082662..1082829 (-)	168	WP_002945733.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
AVT04_RS05880 (AVT04_05880)	-	1083198..1084031 (+)	834	WP_011227577.1	putative RNA methyltransferase	-
AVT04_RS11500 (AVT04_05885)	-	1084146..1084900 (+)	755	Protein_1070	HAD family hydrolase	-
AVT04_RS05890 (AVT04_05890)	dapD	1084986..1085684 (+)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=166339 AVT04_RS05855 WP_011227579.1 1080595..1080987(+) (ssbA) [Streptococcus thermophilus strain S9]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=166339 AVT04_RS05855 WP_011227579.1 1080595..1080987(+) (ssbA) [Streptococcus thermophilus strain S9]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A2S4DWC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385