Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   AVT04_RS05000 Genome accession   NZ_CP013939
Coordinates   931444..932211 (-) Length   255 a.a.
NCBI ID   WP_011226714.1    Uniprot ID   Q5M227
Organism   Streptococcus thermophilus strain S9     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 926444..937211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS04980 (AVT04_04980) ychF 926979..928094 (-) 1116 WP_002948588.1 redox-regulated ATPase YchF -
  AVT04_RS04985 (AVT04_04985) - 928307..928498 (-) 192 WP_011226716.1 DUF951 domain-containing protein -
  AVT04_RS04990 (AVT04_04990) dnaN 928549..929685 (-) 1137 WP_011226715.1 DNA polymerase III subunit beta -
  AVT04_RS04995 (AVT04_04995) dnaA 929840..931204 (-) 1365 WP_002948584.1 chromosomal replication initiator protein DnaA -
  AVT04_RS05000 (AVT04_05000) spo0J 931444..932211 (-) 768 WP_011226714.1 ParB/RepB/Spo0J family partition protein Regulator
  AVT04_RS05005 (AVT04_05005) htrA 932277..933512 (-) 1236 WP_011226713.1 S1C family serine protease Regulator
  AVT04_RS05010 (AVT04_05010) rlmH 933717..934196 (+) 480 WP_011226712.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AVT04_RS05015 (AVT04_05015) - 934212..934895 (+) 684 WP_011226711.1 YoaK family protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29485.94 Da        Isoelectric Point: 9.6649

>NTDB_id=166331 AVT04_RS05000 WP_011226714.1 931444..932211(-) (spo0J) [Streptococcus thermophilus strain S9]
MSEQLKTLSISEIYPNPFQPRLKFSDEELVELSQSISENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRNLIDELTYSHEELAKAMGKSRPYISNALRLLQLPREIQTSIENGSLSQG
HARALLAIEDSRKQLTIFQQVVAERWSVRTLEKKLQELPRKQKSKKDIHVKDKEKELERLLGLPITLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=166331 AVT04_RS05000 WP_011226714.1 931444..932211(-) (spo0J) [Streptococcus thermophilus strain S9]
ATGTCAGAACAACTCAAAACTTTATCTATTAGTGAAATTTACCCCAATCCTTTTCAACCTCGTCTAAAATTCTCCGATGA
AGAGTTAGTAGAACTAAGTCAATCAATATCAGAAAATGGTTTAATACAGCCAATTATTGTACGAAAATCTGACATTATTG
GTTATGAACTAATTGCTGGAGAAAGACGTTTACGAGCCTGTAAACGTTTAGGGATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATCTACAACGATCAAATCTCAATCCTATTGAAGAAGC
AAAGGCCTATCGTAATTTAATTGATGAGTTAACTTATAGTCACGAGGAGCTCGCTAAAGCTATGGGAAAATCTAGACCAT
ATATTAGTAACGCTCTTAGACTACTACAACTTCCGCGAGAGATACAAACGAGTATTGAAAACGGAAGTCTGAGTCAGGGA
CATGCTAGAGCACTCTTAGCTATTGAGGATTCTCGAAAGCAGTTAACCATCTTTCAGCAGGTTGTGGCTGAAAGATGGTC
TGTTCGTACTCTAGAAAAAAAACTTCAGGAACTTCCTAGAAAACAAAAATCTAAAAAAGATATCCATGTAAAAGATAAAG
AAAAAGAACTTGAAAGATTACTAGGTCTCCCTATAACTCTACGTTATCACAAAAATCACTCAGGAACGATTCAAATACAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATCTAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(147-196)

ParB/Sulfiredoxin domain (ParB_N)

(8-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M227

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.863

100

0.569

Multiple sequence alignment