Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AUC62_RS04090 Genome accession   NZ_CP013934
Coordinates   886009..887823 (+) Length   604 a.a.
NCBI ID   WP_010372513.1    Uniprot ID   -
Organism   Weissella cibaria strain CMS3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 881009..892823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC62_RS04065 (AUC62_00824) - 881259..881576 (+) 318 WP_010372498.1 PTS sugar transporter subunit IIB -
  AUC62_RS04070 (AUC62_00825) - 881622..881945 (+) 324 WP_010372502.1 PTS lactose/cellobiose transporter subunit IIA -
  AUC62_RS04075 (AUC62_00826) - 881951..883402 (+) 1452 WP_010372504.1 6-phospho-beta-glucosidase -
  AUC62_RS04080 (AUC62_00827) - 883469..884833 (+) 1365 WP_010372507.1 PTS sugar transporter subunit IIC -
  AUC62_RS04085 (AUC62_00828) - 884971..885969 (+) 999 WP_197458866.1 competence protein CoiA -
  AUC62_RS04090 (AUC62_00829) pepF 886009..887823 (+) 1815 WP_010372513.1 oligoendopeptidase F Regulator
  AUC62_RS04095 (AUC62_00830) - 887913..888632 (-) 720 WP_010372516.1 MIP/aquaporin family protein -
  AUC62_RS04100 (AUC62_00831) - 888940..889329 (+) 390 WP_010372520.1 DUF948 domain-containing protein -
  AUC62_RS04105 (AUC62_00832) - 889345..889917 (+) 573 WP_010372524.1 hypothetical protein -
  AUC62_RS04110 (AUC62_00833) ccpA 889976..890977 (-) 1002 WP_010373031.1 catabolite control protein A -
  AUC62_RS04115 (AUC62_00834) - 891229..892329 (+) 1101 WP_010373028.1 M24 family metallopeptidase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67749.61 Da        Isoelectric Point: 4.2890

>NTDB_id=166262 AUC62_RS04090 WP_010372513.1 886009..887823(+) (pepF) [Weissella cibaria strain CMS3]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFVQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALTFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEQRLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=166262 AUC62_RS04090 WP_010372513.1 886009..887823(+) (pepF) [Weissella cibaria strain CMS3]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCTGAGTCAATGACTTGGAATTTGCAGACAATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGATTTCTTCGTCCAATCAGCAACGACGTCTG
GTACAGATTTGTACAATGCGTTGCAATACGGTTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCAGCACGTGTTTCGGC
AGCCATTGCATTCTTTGATCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAGCCTAAGC
TGGGGGCGTATAAGCATTACTTCGAGAGCATCTTGACGCAACAAGGTCACGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCTGGGGATGTTTTTGGGGCGTCAGAACGGACATTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTATTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATTGCCAGTCACGTG
AAGGGTCATAACTTTATGGCGGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTGGCGGAAGTAAATGAAGCGTTGCCGTTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGACGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGCGAACCTGACTTTACGATTGATTACGAA
TCTGCCCAGGCTGAAGCATTGAAGGCGTTGGCACCATTGGGCGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCCTACTCGGGCGGTTCATATGATACAAATCCATTCA
TTTTGCTGAACTGGGTTGATAACCTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCATATTTG
ACTCGTCAAAATCAGCCTTACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCATATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACGGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGATGCACGTGACGGATGCGCAAGGCGTGCCATTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAACTTAACCGACGTTACTACGGCCCAGCCTTGACGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTACTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGATAAGATTTTGACTGAAGGGGCACCGGCTGTGGCGGCTTACAAGGAATACTTGAAGGCCGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCCGGGCTTGATATGACTAAGCCAGATTACTTGCGTGATACATTCAAAGTGTT
CGAACAGCGCTTGAACGAATTTGAAGCGTTGGTGGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.299

97.848

0.522

Multiple sequence alignment