Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   A7J08_RS04275 Genome accession   NZ_CP017088
Coordinates   853937..854419 (-) Length   160 a.a.
NCBI ID   WP_024381385.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 848937..859419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS04250 (A7J08_04105) pheT 849246..851645 (+) 2400 WP_148115703.1 phenylalanine--tRNA ligase subunit beta -
  A7J08_RS04255 (A7J08_04110) - 851700..851966 (+) 267 WP_148115704.1 DUF2087 domain-containing protein -
  A7J08_RS04260 (A7J08_04115) - 851987..852289 (-) 303 WP_148115705.1 hypothetical protein -
  A7J08_RS04265 (A7J08_04120) - 852482..853225 (+) 744 WP_105105172.1 polyphosphate polymerase domain-containing protein -
  A7J08_RS04270 (A7J08_04125) - 853212..853889 (+) 678 WP_024410402.1 DUF4956 domain-containing protein -
  A7J08_RS04275 (A7J08_04130) mutX 853937..854419 (-) 483 WP_024381385.1 8-oxo-dGTP diphosphatase Machinery gene
  A7J08_RS04280 (A7J08_04135) folE 854586..855149 (+) 564 WP_044755661.1 GTP cyclohydrolase I FolE -
  A7J08_RS04285 (A7J08_04140) folP 855158..855970 (+) 813 WP_148115706.1 dihydropteroate synthase -
  A7J08_RS04290 (A7J08_04145) folB 855963..856325 (+) 363 WP_148115707.1 dihydroneopterin aldolase -
  A7J08_RS04295 (A7J08_04150) folK 856322..856810 (+) 489 WP_148115708.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  A7J08_RS04300 (A7J08_04155) - 856861..858171 (+) 1311 WP_148115709.1 GntP family permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18540.89 Da        Isoelectric Point: 4.4960

>NTDB_id=166020 A7J08_RS04275 WP_024381385.1 853937..854419(-) (mutX) [Streptococcus suis strain SRD478]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=166020 A7J08_RS04275 WP_024381385.1 853937..854419(-) (mutX) [Streptococcus suis strain SRD478]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGTAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGTAAGCTGGAACCCGGTGAAACACCGCAGGCTTGTG
CCATTCGTGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775