Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   A7J08_RS03545 Genome accession   NZ_CP017088
Coordinates   699083..701296 (+) Length   737 a.a.
NCBI ID   WP_053867361.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 694083..706296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS03540 (A7J08_03415) cls 697379..698926 (+) 1548 WP_002937141.1 cardiolipin synthase -
  A7J08_RS03545 (A7J08_03420) recJ 699083..701296 (+) 2214 WP_053867361.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A7J08_RS03550 (A7J08_03425) - 701275..701673 (+) 399 WP_148115681.1 hypothetical protein -
  A7J08_RS03555 (A7J08_03430) - 701771..702283 (+) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  A7J08_RS03560 (A7J08_03435) metA 702387..703328 (+) 942 WP_014637718.1 homoserine O-succinyltransferase -
  A7J08_RS03565 (A7J08_03440) - 703338..704012 (+) 675 WP_024399480.1 DnaD domain-containing protein -
  A7J08_RS03570 (A7J08_03445) - 704014..704697 (+) 684 WP_044670584.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  A7J08_RS03575 (A7J08_03450) - 704687..705481 (+) 795 WP_024385624.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82588.28 Da        Isoelectric Point: 4.5398

>NTDB_id=166013 A7J08_RS03545 WP_053867361.1 699083..701296(+) (recJ) [Streptococcus suis strain SRD478]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEGFHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHEIALMIDSKN
VERKDVVQAIYDEAKTMLRHDRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLSDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPVGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAGYLKIKGSLLVKMIQIFQELEFVTITDGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=166013 A7J08_RS03545 WP_053867361.1 699083..701296(+) (recJ) [Streptococcus suis strain SRD478]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGATCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGGCTTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTGGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGTATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTCACAGATGGCTATGGGCCAAATCAATCAGTTTACAAGTATT
TTATTGAGCAGCAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCAGAGGGAAATTATCCCTTCAAACATTTGGCGGGCTGCGGTGTGGCTTTCAAATTGGCCTGTGCCCTTCTTG
AAACGGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTGTCCCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGATGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATGAGATTGCTCTCATGATTGACAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCATGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCACCAGCCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCTGTTGAAGCGGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGCCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTCGAAGAGCT
TGCTCTAACCTTGTCAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGACTTTCAGGTGGAATCAGCAAGAACTATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCTGGATTTGATGTGGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAGCAACATCCTATTCCTGTAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAATAAAGCAATTGTCTTAGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAATGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAGACTATTTACCAATTTGATGAGTTTGATGTCCGCTACAAACTGAAAGATTTGGCTGGTTACTTAAAAATTAA
GGGCAGTCTCTTGGTCAAAATGATTCAGATTTTCCAAGAATTAGAATTTGTTACCATTACGGATGGGGTCATGCGGGTCA
ACAAAGAGGCGCAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-433)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.69

99.864

0.726
  recJ Bacillus subtilis subsp. subtilis str. 168

38.235

100

0.388