Detailed information NTG0165997

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: A7J08_RS02235
• Genome accession: NZ_CP017088
• Coordinates: 425593..427692 (+)
• Length: 699 a.a.
• NCBI ID: WP_053867020.1
• Uniprot ID: -
• Organism: Streptococcus suis strain SRD478
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 420593..432692

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7J08_RS02215 (A7J08_02130)	-	421323..422051 (+)	729	WP_023369431.1	MerR family transcriptional regulator	-
A7J08_RS02220 (A7J08_02135)	-	422347..423573 (+)	1227	WP_024383863.1	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	-
A7J08_RS02225 (A7J08_02140)	-	423573..424745 (+)	1173	WP_024406011.1	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	-
A7J08_RS02230 (A7J08_02145)	-	424775..425185 (+)	411	WP_024394801.1	peptide deformylase	-
A7J08_RS02235 (A7J08_02150)	clpC	425593..427692 (+)	2100	WP_053867020.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
A7J08_RS02240 (A7J08_02155)	malQ	427875..429383 (+)	1509	WP_053867021.1	4-alpha-glucanotransferase	-
A7J08_RS02245 (A7J08_02160)	glgP	429376..431640 (+)	2265	WP_053867022.1	glycogen/starch/alpha-glucan family phosphorylase	-
A7J08_RS02250 (A7J08_02165)	-	431868..432575 (-)	708	WP_004194205.1	UTRA domain-containing protein	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77305.28 Da
• Isoelectric Point: 4.8957

>NTDB_id=165997 A7J08_RS02235 WP_053867020.1 425593..427692(+) (clpC) [Streptococcus suis strain SRD478]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDKVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLVDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYIGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNNTLAKKGIQLMVTEAAK
EFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYLEADVVDGSIQIKEQSFA

Nucleotide

• Length: 2100 bp

>NTDB_id=165997 A7J08_RS02235 WP_053867020.1 425593..427692(+) (clpC) [Streptococcus suis strain SRD478]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGATATTTTCAATCAACTTATGGGGAACATGGGTGGATACAGTAC
AGAACGACGTCGCTATTCTATCAATGGGCGTGAAGTGACACCGGAGGAATTCGCTATGTACCGTCAGACTGGTCGCCTGC
CACAGACCGAAGAAGTGGCTCAAACACAGGCTAAAGGTCAGATAAAGTCAGATGGGATTCTTGCAAAACTGGGGCGCAAT
TTGACCCAAGATGCGCGTGAAGGTAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATCCAAGAAACAGCGGAAATTTT
GGCTCGCCGTACGAAAAATAATCCTGTTTTGGTCGGTGATGCTGGTGTTGGTAAAACTGCGGTAGTAGAAGGATTGGCTC
AAGCCATTGTCAACGGAGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATCTCCATTGACATTTCTGGCTTGGAGGCA
GGGACCCAGTACCGTGGAGCTTTTGAGGAAAATGTGCAAAATCTTGTGGATAAAGTCAAAAAAGCTGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGCACTGGCGGAGACTCAGGTTCCAAGGGTTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACACAGGACGAATACCGCAATACCATTCATAAG
AACGCCGCACTGGCTCGTCGTTTCAATGAAGTCAAGGTTAATGCTCCGTCCGCAGAAGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCTGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCCATTGATCTGGTCGATGTGACCGCTGCACACTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTAGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCAGCTGAAAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGATAATCATACGGAGCAACAGAAAG
TGGTGGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGAATTCCAGTCTCTCAAATGGGAGCTTCTGAT
ATTGAACGACTCAAGGAATTGAAAAATCGTCTGGCAGCTAACGTTATTGGTCAAGACGATGCGGTGGAAGCAGTATCTCG
TGCCATTCGTCGGAATCGGGCGGGTTTTGATGACGGCAACCGTCCGATTGGTTCCTTCCTCTTTGTTGGTCCGACAGGTG
TGGGTAAGACAGAGTTGGCAAAACAGTTAGCGCTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCT
GAATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGCTACATTGGCTACGATGACAATTCCCATAC
TCTTACCGAGCGCGTCCGCCGCAATCCGTACTCCATTGTCCTCTTGGATGAGATTGAAAAGGCAGACCCACAAGTGATTA
CCCTTCTCTTACAAGTGCTAGATGATGGGCATTTGACTGATGGACAGGGCAACCAAGTTAACTTTAAAAATACCATTATT
ATCGCGACTTCTAATGCAGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGCATCGCACC
ATTCTTCCGCCCAGAGTTTCTCAATCGTTTTAACGCAGTCATCGAGTTCAAGCATTTGGATAAAGATGATCTCAAAGCCA
TTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGTATCCAATTAATGGTAACGGAAGCTGCCAAA
GAATTCTTGATGGAAGAAGGCTATGACAAGGCCATGGGAGCCCGTCCTCTGCGCCGTGTGATTGAAAATCAGATTCGAGA
CAAGGTAACAGATTACTATTTGGATCATGTCGATGTCAAATATCTGGAAGCGGATGTGGTTGATGGAAGCATCCAAATAA
AAGAGCAAAGCTTTGCTTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

• AAA lid domain (AAA_lid_9) (257-351)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.234	100	0.476
clpE	Streptococcus pneumoniae Rx1	49.689	92.132	0.458
clpE	Streptococcus pneumoniae D39	49.689	92.132	0.458
clpE	Streptococcus pneumoniae R6	49.689	92.132	0.458
clpE	Streptococcus pneumoniae TIGR4	49.689	92.132	0.458
clpE	Streptococcus mutans UA159	49.61	91.702	0.455
clpC	Bacillus subtilis subsp. subtilis str. 168	44.427	92.418	0.411
clpC	Streptococcus pneumoniae Rx1	41.617	95.565	0.398
clpC	Streptococcus pneumoniae D39	41.617	95.565	0.398
clpC	Streptococcus pneumoniae TIGR4	41.379	95.422	0.395
clpC	Streptococcus mutans UA159	43.366	88.412	0.383
clpC	Streptococcus thermophilus LMD-9	42.56	89.413	0.381
clpC	Streptococcus thermophilus LMG 18311	42.4	89.413	0.379
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.673	88.841	0.379