Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AUC43_RS05020 Genome accession   NZ_CP013909
Coordinates   1188376..1189773 (+) Length   465 a.a.
NCBI ID   WP_068190632.1    Uniprot ID   A0A0U3SED4
Organism   Hymenobacter sedentarius strain DG5B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1183376..1194773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC43_RS05000 (AUC43_05000) galE 1183788..1184822 (+) 1035 WP_068190621.1 UDP-glucose 4-epimerase GalE -
  AUC43_RS05005 (AUC43_05005) rfbB 1184952..1186007 (+) 1056 WP_068190624.1 dTDP-glucose 4,6-dehydratase -
  AUC43_RS05010 (AUC43_05010) - 1186105..1187112 (+) 1008 WP_068190626.1 SDR family oxidoreductase -
  AUC43_RS05015 (AUC43_05015) rfbA 1187215..1188093 (+) 879 WP_068190629.1 glucose-1-phosphate thymidylyltransferase RfbA -
  AUC43_RS05020 (AUC43_05020) radA 1188376..1189773 (+) 1398 WP_068190632.1 DNA repair protein RadA Machinery gene
  AUC43_RS05025 (AUC43_05025) - 1190016..1191776 (+) 1761 WP_157780934.1 TlpA disulfide reductase family protein -
  AUC43_RS05030 (AUC43_05030) - 1191962..1192984 (+) 1023 WP_068190635.1 SPASM domain-containing protein -
  AUC43_RS05035 (AUC43_05035) - 1193081..1193422 (-) 342 WP_068190637.1 hypothetical protein -
  AUC43_RS05040 (AUC43_05040) - 1193561..1193782 (-) 222 WP_068190640.1 hypothetical protein -
  AUC43_RS05045 (AUC43_05045) - 1193849..1194652 (-) 804 WP_068190644.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 50136.61 Da        Isoelectric Point: 6.1843

>NTDB_id=165961 AUC43_RS05020 WP_068190632.1 1188376..1189773(+) (radA) [Hymenobacter sedentarius strain DG5B]
MAKARTVFFCQSCGAQSAKWIGRCPACGEWNTYVEEVVQKETVATTTGQWKPASTVPGGNLTKAAKSVPLGDILAEDEPR
IITPDGELNRVLGGGLVPGSIVLIGGEPGIGKSTLMLQIALSLRKMKVLYVSGEESEAQIKMRAERMADGQHPGCYILTE
TNTQNIFRQIDQVQPNILVIDSIQTMHSTLVESGAGSVSQVRECTAEFLKFAKETSTPVLLIGHITKDGSIAGPKILEHM
VDTVLQFEGDRHMSYRILRTTKNRFGSTSELGIYEMQGDGLRQVSNPSEILLSQRAESLSGMAIGATLEGNRPLLVEVQA
LVTPATYGTPQRSSTGFDSKRLQMLLAVLEKRAGLRLGQHDVFLNIAGGLRLDDPALDMAVCAAVVSSLNDLPIPGDVCL
AAEVGLSGEIRAVSRLDQRLAEAEKLGFREMYVSHFNGKGLDLARFGLKVQAVSRLDEVLNGLFG

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=165961 AUC43_RS05020 WP_068190632.1 1188376..1189773(+) (radA) [Hymenobacter sedentarius strain DG5B]
ATGGCCAAAGCCAGAACTGTATTTTTCTGCCAATCCTGCGGTGCCCAATCGGCAAAATGGATAGGCCGCTGCCCCGCGTG
CGGCGAGTGGAACACCTACGTGGAGGAAGTGGTGCAGAAGGAAACCGTGGCCACTACCACGGGCCAGTGGAAGCCCGCCA
GCACCGTGCCCGGCGGCAACCTTACCAAGGCCGCGAAGTCGGTGCCCCTCGGCGACATCCTGGCCGAGGACGAGCCCCGC
ATCATCACGCCAGATGGCGAGCTAAACCGAGTGCTGGGCGGTGGCCTGGTGCCCGGCTCCATTGTGCTCATTGGCGGCGA
GCCCGGCATTGGCAAGAGCACGCTGATGCTGCAAATTGCCCTGAGCCTGCGCAAGATGAAGGTGCTCTACGTGAGCGGCG
AGGAAAGCGAAGCGCAGATAAAAATGCGGGCCGAGCGCATGGCCGACGGCCAACACCCTGGCTGCTACATTCTCACGGAA
ACCAACACCCAGAATATCTTCCGGCAGATTGACCAAGTCCAGCCCAATATTCTGGTCATCGACTCCATCCAGACCATGCA
TTCCACGCTGGTGGAGAGCGGCGCGGGCAGCGTGAGCCAAGTGCGCGAGTGCACCGCCGAGTTTCTGAAATTTGCCAAGG
AAACCAGCACGCCGGTGCTGCTCATCGGCCACATCACCAAGGACGGCAGCATTGCCGGCCCGAAGATATTGGAGCACATG
GTGGACACCGTGCTGCAGTTTGAGGGCGACCGGCACATGAGCTACCGCATTCTGCGCACCACCAAAAACCGCTTCGGCAG
CACCTCGGAGCTGGGCATTTACGAGATGCAGGGCGACGGCCTGCGGCAGGTGAGCAACCCGTCGGAAATCCTGCTTTCGC
AACGCGCCGAGAGCTTGAGCGGCATGGCCATTGGGGCTACGCTTGAGGGCAACCGCCCGCTGCTGGTGGAGGTGCAGGCC
CTCGTCACGCCCGCCACCTACGGCACGCCGCAGCGCAGCAGCACCGGCTTCGACAGCAAGCGCCTGCAAATGCTCCTGGC
TGTGCTGGAGAAGCGCGCCGGCCTGCGGCTGGGCCAGCACGACGTGTTCCTGAACATTGCCGGCGGGCTGCGCCTCGACG
ACCCGGCGCTGGACATGGCCGTGTGCGCGGCGGTGGTGTCTTCGCTGAACGACCTGCCCATTCCCGGCGATGTGTGCCTG
GCCGCCGAGGTTGGGCTGAGCGGCGAAATCCGCGCTGTGTCGCGCCTTGACCAGCGCCTGGCCGAAGCCGAGAAATTAGG
ATTCCGGGAAATGTACGTTTCGCACTTCAACGGTAAAGGGTTGGACCTGGCGCGGTTTGGATTAAAAGTGCAAGCCGTTA
GCCGGCTCGATGAGGTACTGAACGGCTTGTTCGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-229)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(368-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3SED4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.359

100

0.497
  radA Streptococcus pneumoniae Rx1

47.854

100

0.48
  radA Streptococcus pneumoniae D39

47.854

100

0.48
  radA Streptococcus pneumoniae R6

47.854

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.854

100

0.48
  radA Streptococcus mitis NCTC 12261

47.639

100

0.477
  radA Streptococcus mitis SK321

47.639

100

0.477

Multiple sequence alignment