Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0J   Type   Regulator
Locus tag   AV644_RS10865 Genome accession   NZ_CP013908
Coordinates   2091689..2092462 (+) Length   257 a.a.
NCBI ID   WP_000456084.1    Uniprot ID   A0AAD2WW20
Organism   Streptococcus agalactiae strain GBS-M002     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2086689..2097462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AV644_RS10855 (AV644_10490) rlmH 2089682..2090161 (-) 480 WP_000768333.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  AV644_RS10860 (AV644_10495) htrA 2090362..2091591 (+) 1230 WP_000728357.1 S1C family serine protease Regulator
  AV644_RS10865 (AV644_10500) spo0J 2091689..2092462 (+) 774 WP_000456084.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 257 a.a.        Molecular weight: 29239.71 Da        Isoelectric Point: 9.8145

>NTDB_id=165957 AV644_RS10865 WP_000456084.1 2091689..2092462(+) (spo0J) [Streptococcus agalactiae strain GBS-M002]
MEYLETININHIAPNPYQPRLEFNTKELEELADSIKINGLIQPIIVRPSAVFGYELVAGERRLRAAKLAKLESIPAIIKS
YNNDDSMQLAIVENLQRSNLSPIEEAKAYSQLLQKKSMTHEELAKYMGKSRPYISNTIRLLNLPPLITSAIEEGKLSSGH
ARALLSLPDASQQKDWYQRILTEDISVRRLEKLLKQEKKTNHKSLQNKDVFLKHQENELAQFLGSKVKLTINKDGAGNIK
IAFANQEELNRIINTLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=165957 AV644_RS10865 WP_000456084.1 2091689..2092462(+) (spo0J) [Streptococcus agalactiae strain GBS-M002]
ATGGAATATTTAGAAACGATCAACATCAATCATATTGCTCCAAATCCGTATCAACCTCGCCTAGAATTTAATACAAAAGA
ACTAGAAGAATTAGCCGACTCTATTAAAATTAATGGCCTTATTCAACCCATTATTGTAAGACCGTCAGCAGTCTTTGGTT
ACGAACTGGTAGCCGGAGAACGACGGCTAAGAGCCGCAAAGTTAGCTAAATTGGAAAGTATACCTGCAATTATAAAATCC
TATAATAATGATGATAGTATGCAATTAGCTATTGTCGAAAATTTACAACGATCTAATTTGTCACCCATTGAAGAGGCTAA
AGCCTACTCTCAACTTCTACAAAAGAAAAGTATGACACATGAAGAGTTAGCAAAATATATGGGAAAATCTCGTCCCTATA
TATCAAATACGATACGACTACTAAATTTACCGCCACTAATTACTTCAGCTATTGAAGAAGGAAAACTTTCCTCTGGTCAT
GCGCGTGCACTACTCAGTCTACCAGATGCTAGTCAACAGAAAGATTGGTATCAGAGAATCCTCACTGAAGATATTAGTGT
AAGACGACTAGAGAAGTTATTAAAACAAGAAAAGAAAACAAATCATAAGTCACTTCAAAATAAAGATGTCTTTCTAAAAC
ATCAAGAAAATGAGTTAGCTCAATTTCTTGGTAGCAAAGTGAAACTTACTATTAATAAAGATGGTGCTGGCAATATAAAG
ATTGCTTTCGCTAACCAAGAAGAATTAAACAGAATTATCAACACTCTAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.647

99.222

0.572


Multiple sequence alignment