Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MTVDSCj16_RS06765 Genome accession   NZ_CP017033
Coordinates   1278949..1279443 (+) Length   164 a.a.
NCBI ID   WP_002859279.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj16     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273949..1284443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj16_RS06750 (MTVDSCj16_1342) - 1275335..1276513 (-) 1179 WP_069360633.1 metal-dependent hydrolase -
  MTVDSCj16_RS06755 (MTVDSCj16_1343) gpsA 1276523..1277419 (-) 897 WP_079264017.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  MTVDSCj16_RS06760 (MTVDSCj16_1344) gatB 1277416..1278834 (-) 1419 WP_002873172.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  MTVDSCj16_RS06765 (MTVDSCj16_1345) luxS 1278949..1279443 (+) 495 WP_002859279.1 S-ribosylhomocysteine lyase Regulator
  MTVDSCj16_RS06770 (MTVDSCj16_1346) - 1279754..1280746 (+) 993 WP_052805608.1 isopenicillin N synthase family oxygenase -
  MTVDSCj16_RS06775 (MTVDSCj16_1347) - 1280757..1281527 (+) 771 WP_052805609.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  MTVDSCj16_RS06780 (MTVDSCj16_1348) metE 1281539..1283803 (+) 2265 WP_069360634.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18212.25 Da        Isoelectric Point: 7.3250

>NTDB_id=165846 MTVDSCj16_RS06765 WP_002859279.1 1278949..1279443(+) (luxS) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=165846 MTVDSCj16_RS06765 WP_002859279.1 1278949..1279443(+) (luxS) [Campylobacter jejuni subsp. jejuni strain MTVDSCj16]
ATGCCATTATTGGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment