Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MTVDSCj13_RS03115 Genome accession   NZ_CP017032
Coordinates   598664..599047 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 593664..604047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj13_RS03095 (MTVDSCj13_0608) - 593743..595677 (-) 1935 WP_002852122.1 ribonuclease R family protein -
  MTVDSCj13_RS03100 (MTVDSCj13_0609) ilvC 595796..596818 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  MTVDSCj13_RS03105 (MTVDSCj13_0610) - 596822..597904 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  MTVDSCj13_RS03110 (MTVDSCj13_0611) dprA 597894..598667 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  MTVDSCj13_RS03115 (MTVDSCj13_0612) dprB 598664..599047 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  MTVDSCj13_RS03120 (MTVDSCj13_0613) - 599076..599915 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  MTVDSCj13_RS03125 (MTVDSCj13_0614) msrA 600090..600587 (-) 498 WP_032586473.1 peptide-methionine (S)-S-oxide reductase MsrA -
  MTVDSCj13_RS03130 (MTVDSCj13_0615) ppa 600629..601147 (-) 519 WP_002852138.1 inorganic diphosphatase -
  MTVDSCj13_RS03135 (MTVDSCj13_0616) adk 601157..601735 (-) 579 WP_002859580.1 adenylate kinase -
  MTVDSCj13_RS03140 (MTVDSCj13_0617) aspS 601732..603483 (-) 1752 WP_032586472.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=165785 MTVDSCj13_RS03115 WP_002852281.1 598664..599047(+) (dprB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=165785 MTVDSCj13_RS03115 WP_002852281.1 598664..599047(+) (dprB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj13]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449