Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MTVDSCj07_RS03160 Genome accession   NZ_CP017031
Coordinates   598822..599205 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain MTVDSCj07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 593822..604205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTVDSCj07_RS03140 (MTVDSCj07_0610) - 593901..595835 (-) 1935 WP_002890708.1 ribonuclease R family protein -
  MTVDSCj07_RS03145 (MTVDSCj07_0611) ilvC 595954..596976 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  MTVDSCj07_RS03150 (MTVDSCj07_0612) - 596980..598062 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  MTVDSCj07_RS03155 (MTVDSCj07_0613) dprA 598052..598825 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  MTVDSCj07_RS03160 (MTVDSCj07_0614) dprB 598822..599205 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  MTVDSCj07_RS03165 (MTVDSCj07_0615) - 599234..600073 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  MTVDSCj07_RS03170 (MTVDSCj07_0616) msrA 600249..600746 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  MTVDSCj07_RS03175 (MTVDSCj07_0617) ppa 600787..601305 (-) 519 WP_002867724.1 inorganic diphosphatase -
  MTVDSCj07_RS03180 (MTVDSCj07_0618) adk 601315..601893 (-) 579 WP_002859580.1 adenylate kinase -
  MTVDSCj07_RS03185 (MTVDSCj07_0619) aspS 601890..603641 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=165741 MTVDSCj07_RS03160 WP_002858579.1 598822..599205(+) (dprB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=165741 MTVDSCj07_RS03160 WP_002858579.1 598822..599205(+) (dprB) [Campylobacter jejuni subsp. jejuni strain MTVDSCj07]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449