Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJ14980A_RS05515 Genome accession   NZ_CP017029
Coordinates   1074457..1075008 (+) Length   183 a.a.
NCBI ID   WP_002921394.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 14980A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1069457..1080008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ14980A_RS05480 (CJ14980A_1068) - 1069648..1070073 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  CJ14980A_RS09480 (CJ14980A_1069) - 1070137..1070756 (+) 620 Protein_1058 NAD(P)H-dependent oxidoreductase -
  CJ14980A_RS05490 (CJ14980A_1070) - 1070756..1071361 (+) 606 WP_002882616.1 NAD(P)H-dependent oxidoreductase -
  CJ14980A_RS05495 (CJ14980A_1071) pgsA 1071486..1072022 (+) 537 WP_057032899.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJ14980A_RS05500 (CJ14980A_1072) rseP 1072019..1073125 (+) 1107 WP_052793046.1 RIP metalloprotease RseP -
  CJ14980A_RS05505 (CJ14980A_1073) - 1073118..1073984 (+) 867 WP_058000704.1 VirK family antimicrobial peptide resistance protein -
  CJ14980A_RS05510 (CJ14980A_1074) rpsF 1074071..1074448 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  CJ14980A_RS05515 (CJ14980A_1075) ssb 1074457..1075008 (+) 552 WP_002921394.1 single-stranded DNA-binding protein Machinery gene
  CJ14980A_RS05520 (CJ14980A_1076) rpsR 1075019..1075279 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJ14980A_RS05525 (CJ14980A_1077) lon 1075339..1077714 (-) 2376 WP_052779714.1 endopeptidase La -
  CJ14980A_RS05530 (CJ14980A_1078) bamD 1077731..1078378 (-) 648 WP_002936691.1 outer membrane protein assembly factor BamD -
  CJ14980A_RS05535 (CJ14980A_1079) fliW 1078539..1078928 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJ14980A_RS05540 (CJ14980A_1080) proC 1078928..1079659 (+) 732 WP_052801667.1 pyrroline-5-carboxylate reductase Machinery gene
  CJ14980A_RS05545 (CJ14980A_1081) ctsT 1079656..1079958 (+) 303 WP_002936694.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20740.63 Da        Isoelectric Point: 5.0431

>NTDB_id=165703 CJ14980A_RS05515 WP_002921394.1 1074457..1075008(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 14980A]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=165703 CJ14980A_RS05515 WP_002921394.1 1074457..1075008(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 14980A]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393

Multiple sequence alignment