Detailed information NTG0165693

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: CJ14980A_RS02390
• Genome accession: NZ_CP017029
• Coordinates: 457704..460277 (-)
• Length: 857 a.a.
• NCBI ID: WP_058000757.1
• Uniprot ID: -
• Organism: Campylobacter jejuni subsp. jejuni strain 14980A
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 452704..465277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJ14980A_RS02380 (CJ14980A_0464)	maf	455196..455747 (+)	552	WP_052794103.1	septum formation inhibitor Maf	-
CJ14980A_RS02385 (CJ14980A_0465)	pbpA	455744..457675 (+)	1932	WP_058000756.1	penicillin-binding protein 1A	-
CJ14980A_RS02390 (CJ14980A_0466)	clpC	457704..460277 (-)	2574	WP_058000757.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
CJ14980A_RS02395 (CJ14980A_0467)	-	460389..460679 (-)	291	WP_002892330.1	metal-sensing transcriptional repressor	-
CJ14980A_RS02400 (CJ14980A_0468)	-	460797..462131 (+)	1335	WP_002892332.1	S41 family peptidase	-
CJ14980A_RS02405 (CJ14980A_0469)	purC	462133..462843 (+)	711	WP_002892334.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
CJ14980A_RS02410 (CJ14980A_0470)	purS	462852..463097 (+)	246	WP_002872631.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
CJ14980A_RS02415 (CJ14980A_0471)	purQ	463099..463771 (+)	673	Protein_460	phosphoribosylformylglycinamidine synthase I	-
CJ14980A_RS02420 (CJ14980A_0472)	-	463743..464939 (+)	1197	WP_058000758.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95527.67 Da
• Isoelectric Point: 5.3329

>NTDB_id=165693 CJ14980A_RS02390 WP_058000757.1 457704..460277(-) (clpC) [Campylobacter jejuni subsp. jejuni strain 14980A]
MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDSTSILNQILNKLNISKEALELEIKSRISKLATSSNVS
RENIRFSNELINSLENAKGLMSANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLNEIAKELANLKEKQNALNSQFENEKSVFDGISTKKKEID
LLKNEASLAKARGEFQKAAELEYGKIPSLEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDNIIIDAKDDEIIIKKA

Nucleotide

• Length: 2574 bp

>NTDB_id=165693 CJ14980A_RS02390 WP_058000757.1 457704..460277(-) (clpC) [Campylobacter jejuni subsp. jejuni strain 14980A]
ATGGCAAATATACAAGATTTTTTAACTGATAATATGCTTTCAAACCTTGAAAGTGCAGCATCTTTAGCTATACATTCTAA
AAATAATGAAGTTGTACCTTTACATCTTTTATGGGCTTTAAGCGTAGATAGTACAAGTATTTTAAATCAAATTTTAAATA
AATTAAATATTTCTAAAGAAGCCTTAGAACTTGAAATTAAAAGCAGAATTTCAAAACTTGCAACAAGTTCAAATGTAAGC
CGTGAAAATATACGCTTTTCCAATGAACTTATAAATTCATTAGAAAATGCTAAAGGATTGATGAGTGCTAATGGAGATAG
TTATTTAAGTGTGGATACTTGGCTTATAAGTGAAAGTCAAAAAAGTCCTATTAAAGAAATTTTGGCGCAATTTTTAGATT
TAAGAGAATTTCAAAAAGAGCTTGAAAGTCTAAGAGCAGGACGCAAAATAGATAGCAAAACAAGCGATGAAACTTTAGAT
AGTTTAAATAAATTTGGTATAGATTTAACCTTAAAAGCAAGCGAGGGTAAACTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGTTTGATGCAAATTTTAATACGCAAAACCAAAAACAACCCTATACTTTTAGGTGAACCAGGCGTAGGAAAAA
CAGCTATAGTGGAAGCTTTAGCACAAAGAATTATTAAAAAAGATGTTCCAAAATCTTTGCAAAATAAAAAAGTTATCGCT
CTTGATATGAGTGCTTTAATTGCAGGTGCAAAATACAGAGGAGAATTCGAAGATAGATTAAAAGCTGTGGTTAATGAAGT
GATAAAAAGTGAAAATATCATTCTTTTTATCGATGAAATTCACACTATAGTAGGAGCTGGAGCGAGTGAAGGCAGTATGG
ATGCGGCAAATATTTTAAAACCCGCTCTTGCAAGAGGTGAACTCCATACCATAGGCGCAACTACTTTAAAAGAATATCGT
AAATATTTTGAAAAAGATGCAGCCTTGCAACGCCGTTTTCAACCTGTAAATGTGGGCGAACCAAGTGTTAATGAGGCTTT
GGCTATGTTAAGGGGTATAAAAGAAAAGCTTGAAATTCATCATAATGTAACCATAAATGATAGTGCTTTAGTAGCCGCAG
CTAAACTTTCAAAGCGTTATATAGCAGATCGTTTTTTACCTGATAAGGCTATTGATTTAATCGATGAAGCTGCAGCTGAA
CTGAAAATGCAAATTGAAAGCGAACCAAGTTCTTTAAGAAAAGTACGCAAAGATATAGAAACTTTAGAAGTTGAAAATGA
AGCTTTAAAAATGGAAAATGATGAGAAAAATCAAAAAAGACTCAATGAAATCGCAAAAGAACTAGCCAATTTAAAAGAAA
AACAAAATGCACTAAATTCACAGTTTGAAAATGAAAAAAGTGTTTTTGATGGTATAAGCACTAAGAAAAAAGAAATTGAT
CTACTTAAAAATGAAGCTTCTTTAGCTAAAGCTAGAGGTGAATTTCAAAAAGCAGCTGAGTTAGAGTATGGAAAAATTCC
AAGTCTTGAAAAAGAAGTAGAAATTTTAGAAGATAAATGGAAAAAAATGAGCGAAAATGGAGTTTTACTTAAAAATCAAG
TAGATGAGGATTTGGTTGCTGGAATTTTAAGCAAATGGACAGGTATTAGCGTGCAAAAAATGCTAACTTCCGAAAAACAA
AAATTCTTAGAAGTGGAAAAACATTTAAAAGAAAGTGTTATAGGACAAGATAAGGCCTTAAGTGCTTTAGCTAGAGCCAT
TAAACGCAACAAAGCAGGACTTAATGCAGACAATAAACCTATAGGAAGCTTTTTATTTTTAGGGCCAACAGGGGTAGGAA
AAACACAATCAGCTAAAGCTTTGGCGAAATTTTTATTTGATGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGTGTTTCAAGACTCTTAGGTGCGCCTCCAGGATACATAGGACATGAAGAAGGTGGAGAGCTTACTGA
AGCTGTACGAAGAAAACCTTATAGCGTGCTTTTGTTTGATGAAGTTGAAAAAGCACATAAAGATGTATTTAATGTGCTTT
TAGGGATTTTAGATGATGGTAGAGCAACCGATAGTAAAGGTGTAACAGTGGATTTTAAAAATACCATTATCATTTTAACT
TCTAATATCGCCTCAAGTGCCATTATGAATTTAAGTGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAGTTTTTAAACCGCTTAGATGATATTATCACCTTTAATCCACTTGGAAAAGATGAAGCTTATGAAATAG
TCAAGCTTTTATTTAAAGATTTACAAATGAGCTTAGAAAACAAGGGGATAAAAGCGAGTTTAAGCGAAAATGCAGCCCTT
TTAATCGCTAAAGATGGTTTTGATCCTGATTTTGGTGCTAGACCTTTAAGAAGAGCTATTTATGATCTTATAGAAGATAA
ATTAAGCGATATGATACTTGCTGATGAACTTCATGAAAATGATAATATTATCATTGATGCAAAAGATGATGAAATAATCA
TCAAAAAAGCTTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-844)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• AAA lid domain (AAA_lid_9) (342-444)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.291	100	0.433
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	40.987	100	0.417