Detailed information NTG0165677

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: CC14983A_RS06985
• Genome accession: NZ_CP017025
• Coordinates: 1350618..1353191 (+)
• Length: 857 a.a.
• NCBI ID: WP_002779741.1
• Uniprot ID: A0ABP2NS93
• Organism: Campylobacter coli strain 14983A
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1345618..1358191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CC14983A_RS06955 (CC14983A_1373)	-	1345915..1347027 (-)	1113	WP_002776058.1	SH3 domain-containing protein	-
CC14983A_RS06960 (CC14983A_1374)	purQ	1347059..1347755 (-)	697	Protein_1369	phosphoribosylformylglycinamidine synthase I	-
CC14983A_RS06965 (CC14983A_1375)	purS	1347755..1348000 (-)	246	WP_002776055.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
CC14983A_RS06970 (CC14983A_1376)	purC	1348009..1348719 (-)	711	WP_002776052.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
CC14983A_RS06975 (CC14983A_1377)	-	1348722..1350059 (-)	1338	WP_031263624.1	S41 family peptidase	-
CC14983A_RS06980 (CC14983A_1378)	-	1350202..1350483 (+)	282	WP_002779742.1	metal-sensing transcriptional repressor	-
CC14983A_RS06985 (CC14983A_1379)	clpC	1350618..1353191 (+)	2574	WP_002779741.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
CC14983A_RS06990 (CC14983A_1380)	-	1353234..1355165 (-)	1932	WP_002779740.1	penicillin-binding protein 1A	-
CC14983A_RS06995 (CC14983A_1381)	maf	1355162..1355713 (-)	552	WP_002779739.1	septum formation inhibitor Maf	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95550.51 Da
• Isoelectric Point: 5.2845

>NTDB_id=165677 CC14983A_RS06985 WP_002779741.1 1350618..1353191(+) (clpC) [Campylobacter coli strain 14983A]
MANIQEFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALIVDSSSILNQICNKFNISKEALELEIKSRISNLATSSNVN
RENVRFSNEFINSLESAKGLMSANGDNYLSVDTWLISESEKNPIREILAKFIDIKEFQKELQNLRAGRKIESKTSDETLD
SLNKFGIDLTAKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKARKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQSALNSQFENEKAVFDSISAKKKEID
SLKNEAVFAKNKGEFQKAAELEYGKIPECEKEVANLEEKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYVGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNILLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQKSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADKLNENDEIVIDAKNDEIVIEKA

Nucleotide

• Length: 2574 bp

>NTDB_id=165677 CC14983A_RS06985 WP_002779741.1 1350618..1353191(+) (clpC) [Campylobacter coli strain 14983A]
ATGGCAAATATACAAGAATTTTTAACCGACAATATGCTTTCAAACCTTGAAAGTGCAGCGTCTTTGGCGATTCATTCTAA
AAATAATGAAGTTGTCCCTTTACATCTTTTATGGGCTTTAATTGTAGACAGTTCAAGTATTTTAAATCAAATTTGTAATA
AATTTAATATTTCAAAAGAAGCTTTAGAACTTGAAATCAAAAGCAGAATTTCAAATCTTGCAACAAGCTCTAATGTCAAT
CGTGAAAATGTGCGTTTTTCTAATGAATTTATCAATTCCTTAGAAAGTGCTAAAGGACTTATGAGTGCCAATGGTGATAA
TTACTTAAGTGTAGATACTTGGCTTATAAGCGAAAGCGAAAAAAATCCTATTAGAGAAATTTTAGCCAAATTTATAGATA
TTAAAGAATTTCAAAAAGAGCTCCAAAATTTAAGAGCAGGACGCAAAATCGAAAGCAAAACAAGTGATGAAACCCTAGAT
AGCTTAAATAAATTTGGTATAGATTTAACCGCAAAAGCAAGTGAAGGAAAGCTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAACGCTTAATGCAAATTCTTATACGCAAAACAAAAAACAACCCTATACTTTTAGGTGAACCAGGAGTAGGAAAAA
CAGCGATCGTAGAAGCTTTAGCACAAAGAATTATCAAAAAAGATGTGCCAAAATCTTTACAAAATAAAAAAGTCATAGCT
CTTGATATGAGTGCATTGATCGCAGGAGCAAAATATCGTGGAGAATTTGAAGATAGATTAAAAGCGGTGGTAAATGAGGT
CATTAAAAGTGAAAATATCATACTTTTTATCGATGAAATTCACACCATAGTAGGCGCAGGAGCAAGCGAAGGAAGTATGG
ATGCTGCAAATATTTTAAAGCCGGCACTTGCAAGAGGCGAACTTCACACCATAGGAGCAACCACTCTTAAAGAATATCGT
AAATACTTTGAAAAAGATGCGGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGCGAACCTAGCGTAAATGAAGCTTT
AGCAATGCTAAGGGGTATTAAAGAAAAACTTGAAATTCATCACAATGTCACCATCAATGATAGTGCTTTAGTAGCGGCAG
CTAAGCTTTCAAAACGCTATATTGCCGATCGTTTTTTACCCGATAAAGCAATTGATTTAATCGATGAAGCTGCGGCTGAA
CTTAAAATGCAAATTGAAAGCGAACCAAGCTCTTTGAGAAAGGCACGCAAAGACATAGAAACTTTAGAAGTAGAAAATGA
AGCTCTAAAGATGGAAAATGATGAAAAAAATCAAAAAAGACTAGATGAAATTGCCAAAGAACTGGCCAATTTAAAAGAAA
AACAAAGTGCTTTAAATTCACAATTTGAAAATGAAAAAGCAGTTTTTGATAGCATAAGCGCAAAGAAAAAAGAAATCGAT
AGTCTTAAAAACGAAGCTGTTTTTGCAAAAAATAAGGGTGAATTCCAAAAAGCTGCAGAATTAGAATATGGCAAAATTCC
AGAATGCGAAAAAGAAGTGGCAAATTTAGAAGAAAAATGGAAAAAAATGAGCGAAAATGGAGTCTTGCTTAAAAATCAAG
TGGATGAAGATTTGGTTGCTGGAATTTTAAGCAAATGGACAGGAATTAGCGTGCAAAAAATGCTGACTTCAGAGAAGCAA
AAATTTTTGGAAGTAGAAAAACACTTAAAAGAAAGTGTGATTGGGCAAGATAAGGCTCTAAGCGCTTTAGCAAGAGCTAT
CAAACGCAATAAAGCAGGATTAAATGCAGACAATAAGCCTATAGGAAGCTTTTTATTTTTAGGGCCTACAGGAGTAGGAA
AAACACAATCTGCTAAGGCTTTGGCGAAATTTTTATTTGATGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGCGTTTCAAGACTCTTAGGAGCGCCTCCAGGTTATGTAGGGCATGAAGAAGGCGGAGAGCTTACTGA
AGCGGTGCGTAGAAAACCTTATAGCGTGCTTTTATTTGATGAAGTCGAAAAAGCCCACAAGGATGTGTTTAATATACTTT
TAGGAATTTTAGACGATGGTAGGGCAACTGATAGCAAGGGTGTAACTGTGGATTTTAAAAATACCATTATTATTTTAACT
TCTAATATCGCCTCAAGTGCTATCATGAATTTAAGCGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAATTTTTAAACCGCTTAGACGATATCATCACCTTTAATCCACTTGGAAAAGATGAGGCATATGAGATAG
TTAAACTTTTATTTAAAGACTTGCAAAAAAGTTTGGAAAATAAGGGTATAAAAGCAAGTCTTAGTGAAAATGCTGCGCTT
TTAATCGCTAAGGACGGATTTGATCCTGACTTTGGTGCTAGACCTTTAAGAAGGGCTATTTATGATTTAATCGAAGACAA
GCTAAGCGATATGATACTTGCAGACAAGCTTAATGAAAATGATGAGATTGTTATCGATGCAAAAAATGATGAGATTGTTA
TCGAAAAAGCTTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

• AAA lid domain (AAA_lid_9) (342-444)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-845)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.611	99.533	0.434
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.581	100	0.424