Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CC14983A_RS03550 Genome accession   NZ_CP017025
Coordinates   709362..709910 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain 14983A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 704362..714910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC14983A_RS03520 (CC14983A_0691) ctsT 704405..704710 (-) 306 WP_002777852.1 hypothetical protein Machinery gene
  CC14983A_RS03525 (CC14983A_0692) proC 704707..705444 (-) 738 WP_002787902.1 pyrroline-5-carboxylate reductase Machinery gene
  CC14983A_RS03530 (CC14983A_0693) fliW 705444..705833 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  CC14983A_RS03535 (CC14983A_0694) - 705997..706644 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  CC14983A_RS03540 (CC14983A_0695) lon 706660..709035 (+) 2376 WP_002777089.1 endopeptidase La -
  CC14983A_RS03545 (CC14983A_0696) rpsR 709091..709351 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  CC14983A_RS03550 (CC14983A_0697) ssb 709362..709910 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  CC14983A_RS03555 (CC14983A_0698) rpsF 709919..710296 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  CC14983A_RS03560 (CC14983A_0699) - 710575..711846 (+) 1272 WP_002777080.1 MFS transporter -
  CC14983A_RS03565 (CC14983A_0700) - 711846..712847 (+) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase family protein -
  CC14983A_RS03570 (CC14983A_0701) - 712840..713480 (-) 641 Protein_701 DUF535 family protein -
  CC14983A_RS11315 - 713444..713695 (-) 252 WP_048813181.1 hypothetical protein -
  CC14983A_RS03575 (CC14983A_0702) rseP 713692..714795 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=165666 CC14983A_RS03550 WP_002777084.1 709362..709910(-) (ssb) [Campylobacter coli strain 14983A]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=165666 CC14983A_RS03550 WP_002777084.1 709362..709910(-) (ssb) [Campylobacter coli strain 14983A]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379