Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CC14983A_RS02975 Genome accession   NZ_CP017025
Coordinates   595966..596460 (-) Length   164 a.a.
NCBI ID   WP_002777353.1    Uniprot ID   A0ABP2NQV1
Organism   Campylobacter coli strain 14983A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 590966..601460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC14983A_RS02960 (CC14983A_0579) metE 591586..593850 (-) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  CC14983A_RS02965 (CC14983A_0580) - 593873..594643 (-) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CC14983A_RS02970 (CC14983A_0581) - 594657..595649 (-) 993 WP_002777355.1 isopenicillin N synthase family dioxygenase -
  CC14983A_RS02975 (CC14983A_0582) luxS 595966..596460 (-) 495 WP_002777353.1 S-ribosylhomocysteine lyase Regulator
  CC14983A_RS02980 (CC14983A_0583) gatB 596575..597993 (+) 1419 WP_057043379.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CC14983A_RS02985 (CC14983A_0584) - 597993..598892 (+) 900 WP_057041888.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CC14983A_RS02990 (CC14983A_0585) - 598901..600082 (+) 1182 WP_057043378.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18312.23 Da        Isoelectric Point: 5.2464

>NTDB_id=165660 CC14983A_RS02975 WP_002777353.1 595966..596460(-) (luxS) [Campylobacter coli strain 14983A]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGIPDEKSVAKAWEAAMKDILNVSNQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGVMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=165660 CC14983A_RS02975 WP_002777353.1 595966..596460(-) (luxS) [Campylobacter coli strain 14983A]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCTGCTGTGCGTTTAGCTAAAACAATGAAGAC
GCCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCATACCTGATGAAAAAAGTGTGGCCAAGGCTTGGGAAGCTGC
AATGAAAGATATTTTAAATGTGAGCAATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCGTAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.671

98.171

0.713

Multiple sequence alignment