Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   CC14983A_RS01535 Genome accession   NZ_CP017025
Coordinates   310476..311072 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain 14983A     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305476..316072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC14983A_RS01520 (CC14983A_0294) ctsR 308183..308494 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  CC14983A_RS01525 (CC14983A_0295) ctsD 308472..309890 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CC14983A_RS01530 (CC14983A_0296) ctsP 309883..310479 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  CC14983A_RS01535 (CC14983A_0297) ctsX 310476..311072 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  CC14983A_RS01540 (CC14983A_0298) ctsE 311065..312627 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  CC14983A_RS01545 (CC14983A_0299) ctsF 312614..313789 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  CC14983A_RS01550 (CC14983A_0300) - 313786..314550 (-) 765 WP_002784060.1 TSUP family transporter -
  CC14983A_RS01555 (CC14983A_0301) - 314553..315317 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=165645 CC14983A_RS01535 WP_002779313.1 310476..311072(+) (ctsX) [Campylobacter coli strain 14983A]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=165645 CC14983A_RS01535 WP_002779313.1 310476..311072(+) (ctsX) [Campylobacter coli strain 14983A]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434

Multiple sequence alignment