Detailed information NTG0165536

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BFV99_RS26995
• Genome accession: NZ_CP016955
• Coordinates: 5607895..5608899 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain RIVM-EMC2982
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5602895..5613899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFV99_RS26975 (BFV99_26135)	-	5603378..5604385 (+)	1008	WP_012613731.1	TolB family protein	-
BFV99_RS26985 (BFV99_26140)	mutS	5604511..5607078 (+)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
BFV99_RS26990 (BFV99_26145)	fdxA	5607145..5607468 (+)	324	WP_003092272.1	ferredoxin FdxA	-
BFV99_RS26995 (BFV99_26150)	rpoS	5607895..5608899 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
BFV99_RS27000 (BFV99_26155)	-	5609004..5609897 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
BFV99_RS27005 (BFV99_26160)	-	5609943..5610578 (-)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BFV99_RS27010 (BFV99_26165)	surE	5610611..5611360 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
BFV99_RS27015 (BFV99_26170)	truD	5611348..5612415 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
BFV99_RS27020 (BFV99_26175)	ispF	5612412..5612885 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BFV99_RS27025 (BFV99_26180)	fghA	5612956..5613807 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=165536 BFV99_RS26995 WP_003113871.1 5607895..5608899(-) (rpoS) [Pseudomonas aeruginosa strain RIVM-EMC2982]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=165536 BFV99_RS26995 WP_003113871.1 5607895..5608899(-) (rpoS) [Pseudomonas aeruginosa strain RIVM-EMC2982]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653