Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BFV99_RS13550 Genome accession   NZ_CP016955
Coordinates   2826050..2826559 (+) Length   169 a.a.
NCBI ID   WP_003092330.1    Uniprot ID   A0ABN4SQN8
Organism   Pseudomonas aeruginosa strain RIVM-EMC2982     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2821050..2831559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFV99_RS13525 (BFV99_13145) - 2821361..2822116 (+) 756 WP_003104393.1 hypothetical protein -
  BFV99_RS13530 (BFV99_13150) - 2822220..2822474 (+) 255 WP_003087397.1 YkgJ family cysteine cluster protein -
  BFV99_RS13535 (BFV99_13155) - 2822608..2823216 (+) 609 WP_003104390.1 START domain-containing protein -
  BFV99_RS13540 (BFV99_13160) - 2823438..2824637 (+) 1200 WP_001062689.1 site-specific integrase -
  BFV99_RS13545 (BFV99_13165) - 2824634..2825698 (+) 1065 WP_003092331.1 YhcG family protein -
  BFV99_RS13550 (BFV99_13170) radC 2826050..2826559 (+) 510 WP_003092330.1 DNA repair protein RadC Machinery gene
  BFV99_RS13555 (BFV99_13175) - 2826626..2828929 (-) 2304 WP_006379607.1 AAA family ATPase -
  BFV99_RS13560 (BFV99_13180) - 2829475..2830302 (+) 828 WP_003092327.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18809.45 Da        Isoelectric Point: 6.6978

>NTDB_id=165499 BFV99_RS13550 WP_003092330.1 2826050..2826559(+) (radC) [Pseudomonas aeruginosa strain RIVM-EMC2982]
MSQLSFPSFDSCLLVRDAHGRYLPASADDILEAARQVIDRKMRRGAEFTSPAAVKEYLRTKLASFEHEVFVVLFMDTRHR
LIEYREMFHGTIDGASVYPREVVKEALRLNAAAVVVSHNHPSGNPEPSAADRALTQRLKEALGLVDVRVLDHIIVAGNET
ASFAEHGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=165499 BFV99_RS13550 WP_003092330.1 2826050..2826559(+) (radC) [Pseudomonas aeruginosa strain RIVM-EMC2982]
ATGTCGCAACTGTCCTTTCCCTCGTTCGATTCCTGTCTGCTGGTGCGCGACGCGCACGGGCGCTATCTACCGGCATCGGC
CGACGACATTCTGGAAGCTGCGCGCCAGGTCATTGACCGGAAAATGCGGCGCGGAGCAGAGTTCACTTCGCCGGCGGCGG
TCAAGGAATACTTGCGTACAAAGTTGGCCAGCTTCGAGCATGAGGTGTTCGTAGTGCTGTTCATGGATACGCGCCATCGT
CTGATCGAATACAGGGAGATGTTCCACGGCACTATTGACGGTGCGTCGGTGTATCCGCGCGAAGTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCGTCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCTGACCGGGCGC
TGACCCAGCGGCTCAAGGAAGCGTTGGGTCTGGTGGACGTGCGCGTGCTCGATCACATCATCGTTGCGGGCAACGAAACG
GCATCGTTCGCCGAGCATGGGCTGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45

82.84

0.373