Detailed information NTG0165471

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BFV99_RS05610
• Genome accession: NZ_CP016955
• Coordinates: 1198286..1201147 (+)
• Length: 953 a.a.
• NCBI ID: WP_034000756.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain RIVM-EMC2982
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1193286..1206147

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFV99_RS05590 (BFV99_05440)	-	1194324..1195946 (+)	1623	WP_025297844.1	Tn7-like element transposition protein TnsE	-
BFV99_RS35895	-	1196043..1196135 (+)	93	Protein_1083	ATP-binding protein	-
BFV99_RS35900	-	1196429..1196581 (-)	153	Protein_1084	transposase domain-containing protein	-
BFV99_RS35905	-	1196538..1196801 (-)	264	WP_001446199.1	transposase	-
BFV99_RS35910 (BFV99_05445)	-	1196816..1197079 (+)	264	WP_025297682.1	hypothetical protein	-
BFV99_RS05600 (BFV99_05450)	-	1197303..1197584 (+)	282	WP_025297683.1	helix-turn-helix domain-containing protein	-
BFV99_RS05605 (BFV99_05455)	-	1197619..1198188 (+)	570	WP_016782887.1	Hsp20/alpha crystallin family protein	-
BFV99_RS05610 (BFV99_05460)	clpC	1198286..1201147 (+)	2862	WP_034000756.1	heat shock survival AAA family ATPase ClpK	Regulator
BFV99_RS05615 (BFV99_05465)	cls	1201164..1202594 (+)	1431	WP_034000759.1	cardiolipin synthase	-
BFV99_RS05620 (BFV99_05470)	ftsH	1202622..1204439 (+)	1818	WP_025297816.1	ATP-dependent zinc metalloprotease FtsH	-
BFV99_RS05625 (BFV99_05475)	hsp20-GI	1204527..1204985 (+)	459	WP_001275372.1	small heat shock protein sHSP20-GI	-
BFV99_RS05630 (BFV99_05480)	yfdX1	1205008..1205922 (+)	915	WP_025297817.1	heat resistance protein YfdX1	-

Sequence

Protein

• Length: 953 a.a.
• Molecular weight: 104912.87 Da
• Isoelectric Point: 5.6620

>NTDB_id=165471 BFV99_RS05610 WP_034000756.1 1198286..1201147(+) (clpC) [Pseudomonas aeruginosa strain RIVM-EMC2982]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDSPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGEKPFEGEVGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGEMILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYMASRKQYDKAAELGKRIEAKEAELKK
LIEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGD
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHAVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKAGGAAGEEYEKTKSEVMDVLRGHFR
PEFINRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHANARWDDKAERVVFERQEPPAKSAEPEKPDAADVAEAPPGDASKPARKPARKKKSADGES

Nucleotide

• Length: 2862 bp

>NTDB_id=165471 BFV99_RS05610 WP_034000756.1 1198286..1201147(+) (clpC) [Pseudomonas aeruginosa strain RIVM-EMC2982]
ATGGCCAGAAAACAATGCCAGGTCTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGCACCGTCTCGCCGCTGGAAGCCTTGTTTG
GCTCGCGCAGCGGCTTGTTCGAAGACTTCCTCGGCAGCGACTTCTTCCGCATCGGTGACGATTCGCCGTCCATGGCGGCC
GATACCGACGAGGTGGTCGATGCCTCGTTCGGCGAACCCGCCCCGGCTGGTACGGGCACCGCGCGCCGTCGCGGCAGCGG
GCTCGCCAGCCGCATCAGCGAACAGTCCGAGGCCCTGTTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGATGTGGTGAAGACCATCCTGGGACAGTTCAAGATCAAG
GTCGATGACCTCAAGCGACAGATCGAATCCGAAGCCAAGCGCGGCGAGAAGCCGTTCGAGGGCGAAGTCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGCGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCTGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCCGAGCTGGATAA
ATACTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGTGCGCAGGAGATCGAGACCA
CCATCGAGGTGCTGGCCCGGCGCAAGAAAAACAACCCGGTGTTGATCGGTGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGACTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGTCTGGTCGAACTCAACATCAA
CGCCATGGTGGCCGGCGCCAAGTATCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGATGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCACTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACTGTAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTTGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCTCGCCCAGTGGCGGTGCAGGAGCTGGAGTCCGAACTGCACCAGTTGCGGCGTGAGCAGGACT
ATATGGCCTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTGGGCAAGCGCATCGAGGCAAAAGAGGCCGAACTCAAGAAG
CTCATCGAAGAATGGGAACGCGAGCGCGCCTCGGGCAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTGGTGGGCCAGGACGAAGCGGTGCGCGCGGTGGCCGATGCCGTGCGGTTGTCGCGCGCGGGCCTGCGCGAAGGCGAC
AAGCCGGTGGCGACTTTCCTGTTCCTTGGGCCGACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATGCCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAGCCCTACAGCGTGTTGCTG
CTCGATGAGATCGAAAAAGCGCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACCTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCGGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCATCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTTGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGACCACTTCG
CGGAGGAAGGCTACAAGCCCGAGTTCGGCGCGCGTGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCG
CGCGAGATGCTGGGTGGCGGTATCGGCAAGGGTGATCACGCCAACGCCCGCTGGGACGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCACCCGCGAAGTCGGCTGAGCCTGAAAAGCCCGATGCCGCGGACGTGGCCGAGGCACCGCCTGGCG
ACGCGAGCAAGCCTGCGCGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGACGGCGAATCTTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.822	83.001	0.422
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.276	85.834	0.371
clpC	Streptococcus thermophilus LMD-9	41.889	86.674	0.363
clpC	Streptococcus mutans UA159	42.279	85.624	0.362
clpC	Streptococcus thermophilus LMG 18311	41.798	86.359	0.361