Detailed information NTG0165447

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BFV99_RS00165
• Genome accession: NZ_CP016955
• Coordinates: 31626..34487 (+)
• Length: 953 a.a.
• NCBI ID: WP_034000756.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain RIVM-EMC2982
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 26626..39487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFV99_RS00145 (BFV99_00135)	-	27664..29286 (+)	1623	WP_025297844.1	Tn7-like element transposition protein TnsE	-
BFV99_RS35835	-	29383..29475 (+)	93	Protein_27	ATP-binding protein	-
BFV99_RS35840	-	29769..29921 (-)	153	Protein_28	transposase domain-containing protein	-
BFV99_RS35845	-	29878..30141 (-)	264	WP_001446199.1	transposase	-
BFV99_RS35850 (BFV99_00140)	-	30156..30419 (+)	264	WP_025297682.1	hypothetical protein	-
BFV99_RS00155 (BFV99_00145)	-	30643..30924 (+)	282	WP_025297683.1	helix-turn-helix domain-containing protein	-
BFV99_RS00160 (BFV99_00150)	-	30959..31528 (+)	570	WP_016782887.1	Hsp20/alpha crystallin family protein	-
BFV99_RS00165 (BFV99_00155)	clpC	31626..34487 (+)	2862	WP_034000756.1	heat shock survival AAA family ATPase ClpK	Regulator
BFV99_RS00170 (BFV99_00160)	cls	34504..35934 (+)	1431	WP_034000759.1	cardiolipin synthase	-
BFV99_RS00175 (BFV99_00165)	ftsH	35962..37779 (+)	1818	WP_025297816.1	ATP-dependent zinc metalloprotease FtsH	-
BFV99_RS00180 (BFV99_00170)	hsp20-GI	37867..38325 (+)	459	WP_001275372.1	small heat shock protein sHSP20-GI	-
BFV99_RS00185 (BFV99_00175)	yfdX1	38348..39262 (+)	915	WP_025297817.1	heat resistance protein YfdX1	-

Sequence

Protein

• Length: 953 a.a.
• Molecular weight: 104912.87 Da
• Isoelectric Point: 5.6620

>NTDB_id=165447 BFV99_RS00165 WP_034000756.1 31626..34487(+) (clpC) [Pseudomonas aeruginosa strain RIVM-EMC2982]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLARQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDSPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAARHAAEFGRAEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGEKPFEGEVGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGEMILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYMASRKQYDKAAELGKRIEAKEAELKK
LIEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGD
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHAVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKAGGAAGEEYEKTKSEVMDVLRGHFR
PEFINRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKGDHANARWDDKAERVVFERQEPPAKSAEPEKPDAADVAEAPPGDASKPARKPARKKKSADGES

Nucleotide

• Length: 2862 bp

>NTDB_id=165447 BFV99_RS00165 WP_034000756.1 31626..34487(+) (clpC) [Pseudomonas aeruginosa strain RIVM-EMC2982]
ATGGCCAGAAAACAATGCCAGGTCTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGCGCGCCAGCAAAAGCGCACCGTCTCGCCGCTGGAAGCCTTGTTTG
GCTCGCGCAGCGGCTTGTTCGAAGACTTCCTCGGCAGCGACTTCTTCCGCATCGGTGACGATTCGCCGTCCATGGCGGCC
GATACCGACGAGGTGGTCGATGCCTCGTTCGGCGAACCCGCCCCGGCTGGTACGGGCACCGCGCGCCGTCGCGGCAGCGG
GCTCGCCAGCCGCATCAGCGAACAGTCCGAGGCCCTGTTGCAGGAGGCCGCCCGACACGCTGCAGAGTTCGGGCGCGCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGATGTGGTGAAGACCATCCTGGGACAGTTCAAGATCAAG
GTCGATGACCTCAAGCGACAGATCGAATCCGAAGCCAAGCGCGGCGAGAAGCCGTTCGAGGGCGAAGTCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGCGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCTGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCCGAGCTGGATAA
ATACTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGTGCGCAGGAGATCGAGACCA
CCATCGAGGTGCTGGCCCGGCGCAAGAAAAACAACCCGGTGTTGATCGGTGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGACTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGTCTGGTCGAACTCAACATCAA
CGCCATGGTGGCCGGCGCCAAGTATCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGATGATTCTCTTCATCGACGAGGTGCACACCATCGTCGGTGCCGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCACTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACTGTAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTTGACCAGGCGGCCGCACGCGT
GAAGCTGTCGGCCACGGCTCGCCCAGTGGCGGTGCAGGAGCTGGAGTCCGAACTGCACCAGTTGCGGCGTGAGCAGGACT
ATATGGCCTCGCGCAAGCAGTACGACAAGGCCGCCGAGCTGGGCAAGCGCATCGAGGCAAAAGAGGCCGAACTCAAGAAG
CTCATCGAAGAATGGGAACGCGAGCGCGCCTCGGGCAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTGGTGGGCCAGGACGAAGCGGTGCGCGCGGTGGCCGATGCCGTGCGGTTGTCGCGCGCGGGCCTGCGCGAAGGCGAC
AAGCCGGTGGCGACTTTCCTGTTCCTTGGGCCGACCGGCGTGGGCAAGACCGAGCTCGCCAAGGCGCTGGCCGAGTCCAT
CTATGGCGATGAAGGTGCGCTGCTGCGCATCGACATGTCCGAGTACGGGGAACGCCATGCCGTGGCACGCCTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAGCCCTACAGCGTGTTGCTG
CTCGATGAGATCGAAAAAGCGCACCCCGACGTCTACAACATCCTGCTGCAGGTGTTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACCTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCGGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCATCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGCAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTTGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGCTGACCTTCGATCAGACCTTGATCGACCACTTCG
CGGAGGAAGGCTACAAGCCCGAGTTCGGCGCGCGTGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCG
CGCGAGATGCTGGGTGGCGGTATCGGCAAGGGTGATCACGCCAACGCCCGCTGGGACGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCACCCGCGAAGTCGGCTGAGCCTGAAAAGCCCGATGCCGCGGACGTGGCCGAGGCACCGCCTGGCG
ACGCGAGCAAGCCTGCGCGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGACGGCGAATCTTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• AAA lid domain (AAA_lid_9) (449-547)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.822	83.001	0.422
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.276	85.834	0.371
clpC	Streptococcus thermophilus LMD-9	41.889	86.674	0.363
clpC	Streptococcus mutans UA159	42.279	85.624	0.362
clpC	Streptococcus thermophilus LMG 18311	41.798	86.359	0.361