Detailed information NTG0165386

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BC350_RS00175
• Genome accession: NZ_CP016914
• Coordinates: 37555..38688 (-)
• Length: 377 a.a.
• NCBI ID: WP_011001157.1
• Uniprot ID: Q8Y037
• Organism: Ralstonia pseudosolanacearum strain CQPS-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 32555..43688

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BC350_RS00155 (BC350_00160)	ndk	33566..33991 (-)	426	WP_011001161.1	nucleoside-diphosphate kinase	-
BC350_RS00160 (BC350_00165)	-	34360..35061 (+)	702	WP_058906983.1	Bax inhibitor-1/YccA family protein	-
BC350_RS00165 (BC350_00170)	rlmD	35145..36497 (-)	1353	WP_020831713.1	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	-
BC350_RS00170 (BC350_00175)	-	36652..37521 (+)	870	WP_058906984.1	endonuclease/exonuclease/phosphatase family protein	-
BC350_RS00175 (BC350_00180)	rpoS	37555..38688 (-)	1134	WP_011001157.1	RNA polymerase sigma factor RpoS	Regulator
BC350_RS00180 (BC350_00185)	-	38697..39524 (-)	828	WP_016725833.1	peptidoglycan DD-metalloendopeptidase family protein	-
BC350_RS00185 (BC350_00190)	-	39526..40491 (-)	966	WP_071089383.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BC350_RS00190 (BC350_00195)	surE	40507..41262 (-)	756	WP_058906986.1	5'/3'-nucleotidase SurE	-
BC350_RS00195 (BC350_00200)	-	41454..42428 (+)	975	WP_016722151.1	NADPH:quinone oxidoreductase family protein	-
BC350_RS00200 (BC350_00205)	-	42506..43612 (-)	1107	WP_058906987.1	alkene reductase	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 41830.76 Da
• Isoelectric Point: 4.6833

>NTDB_id=165386 BC350_RS00175 WP_011001157.1 37555..38688(-) (rpoS) [Ralstonia pseudosolanacearum strain CQPS-1]
MPRQKAATSANPADETIGAVDGPNAPNGRSGRRARGAAPAASDDVEVVDPLIDEAPAAEPADIADTSDANDSADESDEED
EDGEEAAPEEDFRTVLQAELAADTVQHYLNRISIKPLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRG
VPLLDLIEEGNLGLMHAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSGIDGR
DASIEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASPDQEVAHRELSQLMKSWLARLSDKHR
YVVERRFGLNHIEPATLEELAAEMGLTRERVRQIQQEALVKLKRHFASQGVRKDAVL

Nucleotide

• Length: 1134 bp

>NTDB_id=165386 BC350_RS00175 WP_011001157.1 37555..38688(-) (rpoS) [Ralstonia pseudosolanacearum strain CQPS-1]
ATGCCGCGCCAGAAAGCCGCCACGTCCGCCAACCCCGCCGATGAGACCATCGGCGCCGTCGATGGCCCGAACGCCCCGAA
CGGGCGTAGCGGGCGGCGTGCGCGCGGCGCAGCGCCGGCAGCCTCCGATGACGTCGAAGTCGTCGATCCCCTGATCGATG
AGGCGCCTGCCGCCGAGCCCGCCGACATCGCCGATACCTCGGACGCCAACGACAGCGCCGACGAATCCGACGAAGAGGAC
GAGGACGGCGAGGAAGCCGCGCCTGAGGAAGACTTCCGCACGGTGTTGCAGGCCGAGCTGGCCGCTGACACCGTCCAGCA
TTACCTGAACCGCATCAGCATCAAGCCGCTGCTGACGCCGGCGGAGGAGCTGCACTTCTCCACGCTGGCCAAGGCAGGCG
AGTTCGCCGCGCGGCAGGTGATGATCGAGCGCAATCTGCGCCTGGTGGTCAGTATCGCCAAGGGCTATCTGAACCGCGGC
GTGCCGCTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATGCACGCGATCGAGAAATTCGATCCGGAGCGCGGCTT
CCGTTTCTCCACGTATGCCACGTGGTGGATCCGCCAGAGCATCGAGCGGGCCATCATGAACCAGGCGCGCACCGTCCGCC
TGCCGGTGCACGTGATCCGCGAGCTCAACCAGGTGCTGCGCGCCAAGCGCCATCTGGAAAAGAGCGGCATCGATGGCCGC
GACGCCAGCATCGAAGACATTGCGCACCTGCTCGGCAAGACCACCGAGGAGGTGCAGGACGTGCTTTCGCTCAACGAGCA
CACCACCTCGCTCGATACGCCGTTCGACCTGGATCCGGGCACCAGCCTGCTCGATTTCCTGTCGGACGAGCATGGCGCCT
CGCCAGACCAGGAAGTCGCGCACCGCGAGTTGTCGCAGCTGATGAAATCCTGGCTGGCACGGCTGTCCGACAAGCACCGC
TACGTGGTGGAACGCCGGTTCGGCCTTAACCACATCGAGCCGGCCACCCTCGAAGAGCTGGCCGCCGAGATGGGCCTGAC
GCGCGAGCGTGTGCGTCAGATCCAGCAGGAAGCGCTGGTCAAGCTCAAGCGGCACTTCGCCTCGCAAGGCGTGCGCAAGG
ATGCGGTGCTGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (221-298)

• Sigma-70, region 4 (Sigma70_r4) (311-363)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (103-136)

• Sigma-70 region 2 (Sigma70_r2) (141-210)

3D structure

• AlphaFold DB: Q8Y037

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.903	73.475	0.374