Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BARD7_RS17950 Genome accession   NZ_CP016913
Coordinates   3627252..3628046 (-) Length   264 a.a.
NCBI ID   WP_065982787.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3622252..3633046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS19640 - 3623052..3623295 (-) 244 Protein_3549 ABC transporter substrate-binding protein -
  BARD7_RS17930 (BARD7_03653) - 3623401..3624819 (-) 1419 WP_065982783.1 sensor histidine kinase -
  BARD7_RS17935 (BARD7_03654) - 3624816..3625439 (-) 624 WP_065982784.1 response regulator transcription factor -
  BARD7_RS17945 (BARD7_03655) htrA 3625969..3627165 (-) 1197 WP_065982786.1 S1C family serine protease Regulator
  BARD7_RS17950 (BARD7_03656) vicX 3627252..3628046 (-) 795 WP_065982787.1 MBL fold metallo-hydrolase Regulator
  BARD7_RS17955 (BARD7_03657) - 3628062..3628901 (-) 840 WP_065982788.1 two-component system regulatory protein YycI -
  BARD7_RS17960 (BARD7_03658) yycH 3628888..3630246 (-) 1359 WP_065982789.1 two-component system activity regulator YycH -
  BARD7_RS17965 (BARD7_03659) walK 3630236..3632071 (-) 1836 WP_065982790.1 cell wall metabolism sensor histidine kinase WalK -
  BARD7_RS17970 (BARD7_03660) walR 3632078..3632785 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29146.19 Da        Isoelectric Point: 5.7992

>NTDB_id=165381 BARD7_RS17950 WP_065982787.1 3627252..3628046(-) (vicX) [Bacillus amyloliquefaciens strain RD7-7]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEQIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDSTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=165381 BARD7_RS17950 WP_065982787.1 3627252..3628046(-) (vicX) [Bacillus amyloliquefaciens strain RD7-7]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCCTTTCT
GGTGGATGCCGGCCTGAGCGGAAAAGCGATGGACGGGCTGATGGAGCAAATCGGCCGTAAGATAGACGACGTGGACGGCA
TCTTTGTCACTCATGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCGGTATACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGACACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCGTTCGGCGGGCTTGATGTCGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTCTATGTTTTCC
ATTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATCAAACGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCAAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACAGCACATCACGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCCGCGAAA
GGATTTGTCGCGGGGGAAACGTTTCAATTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527