Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BARD7_RS17620 Genome accession   NZ_CP016913
Coordinates   3557126..3557815 (-) Length   229 a.a.
NCBI ID   WP_013354152.1    Uniprot ID   A0A9P1NJR2
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3552126..3562815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS17600 (BARD7_03587) - 3553031..3553378 (-) 348 WP_065982729.1 YxeA family protein -
  BARD7_RS17605 (BARD7_03588) yxdM 3553392..3555260 (-) 1869 WP_065982730.1 ABC transporter permease YxdM -
  BARD7_RS17610 (BARD7_03589) yxdL 3555235..3556008 (-) 774 WP_065982731.1 ABC transporter ATP-binding protein YxdL -
  BARD7_RS17615 (BARD7_03590) yxdK 3556152..3557129 (-) 978 WP_065982732.1 two-component system sensor histidine kinase YxdK -
  BARD7_RS17620 (BARD7_03591) braR 3557126..3557815 (-) 690 WP_013354152.1 two-component system response regulator YxdJ Regulator
  BARD7_RS17625 (BARD7_03592) fba 3557923..3558795 (-) 873 WP_065982733.1 class II fructose-1,6-bisphosphate aldolase -
  BARD7_RS17630 (BARD7_03593) iolI 3558798..3559640 (-) 843 WP_065982734.1 2-keto-myo-inositol isomerase -
  BARD7_RS17635 (BARD7_03594) - 3559728..3560597 (-) 870 WP_065982735.1 sugar phosphate isomerase/epimerase family protein -
  BARD7_RS17640 (BARD7_03595) - 3560617..3561651 (-) 1035 WP_065982736.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26559.29 Da        Isoelectric Point: 4.8564

>NTDB_id=165377 BARD7_RS17620 WP_013354152.1 3557126..3557815(-) (braR) [Bacillus amyloliquefaciens strain RD7-7]
MNKIMIVEDSEDIRGLLRNYLEKYGYQTVAAADFTAVLDVFLQEKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=165377 BARD7_RS17620 WP_013354152.1 3557126..3557815(-) (braR) [Bacillus amyloliquefaciens strain RD7-7]
TTGAATAAAATCATGATTGTAGAAGACAGTGAAGACATTCGCGGACTATTGCGGAATTATCTTGAAAAATACGGATATCA
AACCGTGGCAGCCGCGGATTTTACAGCTGTTCTTGATGTTTTTTTACAGGAAAAGCCGGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCCTATGACGGCTATTATTGGTGCCGCCAGATCCGTCAGCACTCCACAAGCCCGATCATTTTTATTTCAGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGGGAGAAAGTGCTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAGCGATTTGAACTGCGCTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGT
AAGCTCTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
TATTTTCGTCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CAATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397