Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BARD7_RS13115 Genome accession   NZ_CP016913
Coordinates   2680333..2681028 (-) Length   231 a.a.
NCBI ID   WP_065982124.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2675333..2686028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS13095 (BARD7_02684) - 2675714..2676433 (-) 720 WP_065982120.1 TIGR02206 family membrane protein -
  BARD7_RS13100 (BARD7_02685) - 2676540..2678480 (-) 1941 WP_065982121.1 ABC transporter permease -
  BARD7_RS13105 (BARD7_02686) - 2678477..2679232 (-) 756 WP_065982122.1 ABC transporter ATP-binding protein -
  BARD7_RS13110 (BARD7_02687) - 2679336..2680340 (-) 1005 WP_065982123.1 sensor histidine kinase -
  BARD7_RS13115 (BARD7_02688) braR 2680333..2681028 (-) 696 WP_065982124.1 response regulator transcription factor Regulator
  BARD7_RS13120 (BARD7_02689) - 2681095..2682408 (-) 1314 WP_065982125.1 ABC transporter permease -
  BARD7_RS13125 (BARD7_02690) - 2682398..2683093 (-) 696 WP_065982126.1 ABC transporter ATP-binding protein -
  BARD7_RS13130 (BARD7_02691) - 2683109..2684089 (-) 981 WP_065982127.1 ABC transporter permease -
  BARD7_RS13135 (BARD7_02692) - 2684126..2685112 (-) 987 WP_065982128.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26832.01 Da        Isoelectric Point: 6.1583

>NTDB_id=165351 BARD7_RS13115 WP_065982124.1 2680333..2681028(-) (braR) [Bacillus amyloliquefaciens strain RD7-7]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSQVIREFTEIKPDLVMIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVYQYNAEPALIKRWCGAAIDAETNMVSHENGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=165351 BARD7_RS13115 WP_065982124.1 2680333..2681028(-) (braR) [Bacillus amyloliquefaciens strain RD7-7]
ATGTTTCATATTTTGTTAATAGAAGATGATAACACTTTGTTTCACGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAGGATTTCAGCCAGGTTATCCGGGAGTTTACCGAAATCAAGCCTGATTTGGTGATGATTGATGTGC
AGCTGCCGAAATTTGACGGTTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTGTTTTTGTCCTCG
CGAGATCATCCCGCAGATATGGTCATGTCGATGCAGCTCGGAGCAGATGATTTCATTCAGAAGCCTTTTCATTTTGACGT
CTTGATTGCTAAAATACAAGCCGTGTTTCGGCGGGTGTATCAATACAATGCAGAACCGGCTCTCATCAAAAGGTGGTGCG
GGGCTGCCATTGATGCTGAAACAAACATGGTCAGCCATGAAAACGGTTCAGTTGAGCTGACCAAAAATGAAATGCTGATT
TTAAAACTGCTGGCCGAGCAGAAAAATAAAATCGTCAGCCGCGAAGAACTCATCAGAAGCCTGTGGAATGATGAGCGTTT
CGTCAGTGATAACACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTTGATCAATTAGGCATCGGGAAGATGATTG
AAACCAAAGTGGGGCAGGGGTACATCGCGAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.553

94.805

0.394