Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   BARD7_RS10150 Genome accession   NZ_CP016913
Coordinates   2107899..2109389 (-) Length   496 a.a.
NCBI ID   WP_065981786.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2102899..2114389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS10120 (BARD7_02077) gudB 2102974..2104248 (-) 1275 WP_065522848.1 NAD-specific glutamate dehydrogenase -
  BARD7_RS10125 (BARD7_02078) - 2104410..2104994 (-) 585 WP_065981782.1 genetic competence negative regulator -
  BARD7_RS10130 (BARD7_02079) - 2105146..2105934 (-) 789 WP_065981783.1 metallophosphoesterase -
  BARD7_RS10135 (BARD7_02080) - 2106021..2106479 (-) 459 WP_013352708.1 YpbF family protein -
  BARD7_RS10140 (BARD7_02081) - 2106543..2107319 (-) 777 WP_065981784.1 LysM peptidoglycan-binding domain-containing protein -
  BARD7_RS10145 (BARD7_02082) - 2107297..2107884 (-) 588 WP_065981785.1 CPBP family intramembrane glutamic endopeptidase -
  BARD7_RS10150 (BARD7_02083) recS 2107899..2109389 (-) 1491 WP_065981786.1 RecQ family ATP-dependent DNA helicase Machinery gene
  BARD7_RS10155 (BARD7_02084) - 2109382..2110440 (-) 1059 WP_065981787.1 helix-turn-helix domain-containing protein -
  BARD7_RS10160 (BARD7_02085) - 2110710..2110958 (+) 249 WP_003153403.1 ferredoxin -
  BARD7_RS10165 (BARD7_02086) - 2111096..2111728 (-) 633 WP_076983238.1 ECF transporter S component -
  BARD7_RS10170 (BARD7_02087) serA 2112158..2113735 (+) 1578 WP_065981788.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56175.09 Da        Isoelectric Point: 5.7999

>NTDB_id=165318 BARD7_RS10150 WP_065981786.1 2107899..2109389(-) (recS) [Bacillus amyloliquefaciens strain RD7-7]
MTELHKALYRNFGLHSFKKGQEEIITSVLQKKDTIAMLPTGGGKSLCYQLPGYIMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSDERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAVEHLADNAEKISRVTELAEKLEGPGIVYCPTRKW
AEELAAELNENTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDSRPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILTVIRDAGTSDERKLRDVLISNGVQETQARTAIHLYLQGKTT
KEQLQEELTYRVEKKLHKMNRFSALLERKECIREALLAYFDESYEPEGQTGQCCSSCGIDLAPYEQKGERKNMERFEDWK
LELDRIFGLESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=165318 BARD7_RS10150 WP_065981786.1 2107899..2109389(-) (recS) [Bacillus amyloliquefaciens strain RD7-7]
ATGACTGAGCTGCACAAAGCTTTATACCGGAATTTTGGTTTGCATTCGTTTAAAAAAGGGCAGGAAGAAATCATCACCAG
TGTGCTTCAAAAAAAGGATACGATTGCCATGCTTCCGACAGGCGGGGGGAAATCATTATGCTATCAGCTACCGGGTTACA
TAATGGACGGGCTGGTACTGATTATTTCACCTCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCTGCATTAAACAGCATGCTGAATTCTGACGAGCGGCATTTTATCCTCAGCAACATCAGCCGTTACAA
ATTTCTTTATATGTCTCCTGAAGCCCTCTCGTCACCTTATGTGCTGAACCGTTTGAAAAACGTCCCGGTCAGTTTATTTG
TCATTGATGAGGCTCATTGCATATCAGAGTGGGGACATGATTTCAGGCCTGATTATTCAAAGCTCGGACCTTTCAGACAA
GCACTCGGCAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACGAAAGAAACGCTCAGGGATGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGCCATCTATATTCGGTCAACCGGCCGAATATTCTCTTGGCGGTTGAACACTTGGCTGATAATG
CCGAAAAAATCAGCAGGGTCACAGAGCTTGCCGAAAAGCTCGAGGGCCCGGGCATCGTATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCCGAGCTAAACGAAAATACGGGAAAGCGGACGGATTATTATCACGGGGGAATGGATACAGGAGA
CAGGATATTAATTCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCTGATATCCGCTTTGTTATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGAAGAGCG
GGCCGCGACAGCAGACCGAGTGTCAGTATTTTGCTGAGAGCGCCGGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGTTTGTCCGATTACGACCTGGAAGGTATTCTGACCGTCATACGGGACGCCGGTACGAGCGATGAGCGAAAGCTTC
GGGACGTTCTGATAAGTAACGGCGTTCAGGAAACACAGGCGCGAACGGCCATCCACCTGTACCTGCAAGGAAAAACCACT
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAAAAGCTGCATAAAATGAACCGCTTTTCGGCGTTATTGGA
GCGGAAAGAATGTATAAGAGAAGCGCTATTAGCTTACTTTGATGAATCGTATGAGCCTGAAGGTCAAACCGGGCAATGCT
GCAGCAGCTGCGGAATTGATCTGGCCCCATACGAGCAAAAAGGAGAACGGAAAAACATGGAGCGGTTTGAAGATTGGAAG
CTGGAATTAGACCGGATTTTCGGTTTAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(216-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

69.355

100

0.694