Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BARD7_RS08595 Genome accession   NZ_CP016913
Coordinates   1788282..1788644 (+) Length   120 a.a.
NCBI ID   WP_013352421.1    Uniprot ID   A0A9P1JH52
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783282..1793644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS08565 (BARD7_01759) - 1783737..1783970 (+) 234 WP_065981569.1 DUF896 domain-containing protein -
  BARD7_RS08570 (BARD7_01760) recP/tkt 1784137..1786140 (+) 2004 WP_065981570.1 transketolase Machinery gene
  BARD7_RS08575 (BARD7_01761) sirA 1786291..1786737 (+) 447 WP_065981571.1 sporulation inhibitor of replication protein SirA -
  BARD7_RS08580 (BARD7_01762) - 1786823..1787041 (+) 219 WP_003153994.1 YneF family protein -
  BARD7_RS08585 (BARD7_01763) - 1787115..1787288 (-) 174 WP_088030684.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BARD7_RS08590 (BARD7_01764) - 1787490..1788197 (+) 708 WP_115997459.1 cytochrome c biogenesis protein CcdA -
  BARD7_RS08595 (BARD7_01765) pilH 1788282..1788644 (+) 363 WP_013352421.1 response regulator Machinery gene
  BARD7_RS08600 (BARD7_01766) - 1788724..1789215 (+) 492 WP_139193248.1 CcdC family protein -
  BARD7_RS08605 (BARD7_01767) - 1789243..1789671 (-) 429 WP_065981574.1 DUF2621 domain-containing protein -
  BARD7_RS08610 (BARD7_01768) - 1789905..1790276 (-) 372 WP_065981575.1 Hsp20/alpha crystallin family protein -
  BARD7_RS08615 (BARD7_01769) - 1790371..1790517 (-) 147 WP_003153984.1 small acid-soluble spore protein P -
  BARD7_RS08620 (BARD7_01770) sspO 1790548..1790694 (-) 147 WP_003153982.1 acid-soluble spore protein SspO -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13259.62 Da        Isoelectric Point: 5.2063

>NTDB_id=165312 BARD7_RS08595 WP_013352421.1 1788282..1788644(+) (pilH) [Bacillus amyloliquefaciens strain RD7-7]
MTRVLVVDDAKFMRVKIREILESANYIVAGEAADGEEALAVYQKIRPDLVTMDITMPVKNGIQALQDILAFDPKAHVIMC
TAMRQQRIVLEAIELGAKDFIVKPFEASKVLEAVGRVTGT

Nucleotide


Download         Length: 363 bp        

>NTDB_id=165312 BARD7_RS08595 WP_013352421.1 1788282..1788644(+) (pilH) [Bacillus amyloliquefaciens strain RD7-7]
ATGACACGAGTTTTAGTTGTAGATGACGCCAAGTTCATGAGGGTGAAAATCAGAGAAATTCTGGAATCGGCGAATTACAT
AGTGGCCGGAGAAGCGGCTGACGGCGAGGAAGCCCTGGCGGTATATCAAAAAATACGTCCCGACCTGGTGACAATGGATA
TTACCATGCCGGTCAAAAATGGTATACAGGCGCTGCAGGATATTTTAGCTTTTGACCCGAAAGCCCATGTCATCATGTGC
ACCGCCATGCGGCAGCAGCGGATCGTTCTGGAAGCGATTGAATTAGGCGCTAAAGACTTTATCGTTAAACCGTTTGAAGC
TTCTAAAGTGCTGGAGGCCGTAGGCAGGGTAACGGGAACGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JH52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.667

100

0.367