Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AOX59_RS08445 Genome accession   NZ_CP013862
Coordinates   1683048..1684859 (-) Length   603 a.a.
NCBI ID   WP_068444579.1    Uniprot ID   A0A0U4EDI1
Organism   Lentibacillus amyloliquefaciens strain LAM0015     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678048..1689859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOX59_RS08420 (AOX59_08410) - 1678673..1679248 (+) 576 WP_068444570.1 CYTH domain-containing protein -
  AOX59_RS08425 (AOX59_08415) - 1679328..1679711 (+) 384 WP_068444573.1 globin -
  AOX59_RS08430 (AOX59_08420) - 1679827..1680723 (+) 897 WP_068448219.1 ClpXP adapter SpxH family protein -
  AOX59_RS08435 (AOX59_08425) - 1681367..1681549 (+) 183 WP_068444576.1 hypothetical protein -
  AOX59_RS08440 (AOX59_08430) - 1681573..1682712 (-) 1140 WP_237049427.1 MFS transporter -
  AOX59_RS08445 (AOX59_08435) pepF 1683048..1684859 (-) 1812 WP_068444579.1 oligoendopeptidase F Regulator
  AOX59_RS08450 (AOX59_08440) - 1685104..1686294 (-) 1191 WP_068444582.1 competence protein CoiA -
  AOX59_RS19190 - 1686528..1687442 (-) 915 WP_082684162.1 mechanosensitive ion channel -
  AOX59_RS19195 - 1687448..1688035 (-) 588 WP_082684163.1 mechanosensitive ion channel family protein -
  AOX59_RS08460 (AOX59_08450) mecA 1688303..1688992 (-) 690 WP_068444585.1 adaptor protein MecA -
  AOX59_RS08465 (AOX59_08455) spxA 1689368..1689763 (-) 396 WP_068444588.1 transcriptional regulator SpxA -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69670.99 Da        Isoelectric Point: 4.6079

>NTDB_id=165295 AOX59_RS08445 WP_068444579.1 1683048..1684859(-) (pepF) [Lentibacillus amyloliquefaciens strain LAM0015]
MANAAKELPKREEIPEERKWKLEDIFATDEEWEKELESLKKEFPSVEKFQGKIGDSAQNLYDVLKLQDELSERLGKMFTY
AHMRNDQDTTNSKYQAMESKAENVLTIAASSMSYIVPEILGIEENKLREFMEENEDLKFYEHVLDEINRQRPHVLNEREE
ALLAEASEPMSSASNTFSMLNNADLSFPTIKNEDGEDVDLTHGRYIGFMESGDREVRKSAFKAMYNTYDKFINTFASTLT
GTVKTDNFNAKIRNYDSARQAALDSNNIPETVYDNLVEAVNERLPLLHRYMRLRKEVLDLDELHMYDIYTPLVKDADMNI
SYEQAQQYVLNGLKPLGDDYVSVLKKGFESRWIDVDENKGKRSGAYSSGAYGTHPYILLNWQDKLNDLFTLSHELGHSLH
SYYTHKTQPFRYGNYSIFVAEVASTTNEALLNDYLLKNVDDEKQKLYLLNHYLEGFRGTVFRQTMFAEFEHEIHKRMQNG
EAMTAESLTAIYHDLNKKYYGEDVVSDEEIGKEWARIPHFYMNYYVYQYATGYSAATTLANNILNGEEGAVDRYLDFLKA
GSSDYPIEVLKKAGVDMTAKAPILSALDVFEEKLNEMEELLLK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=165295 AOX59_RS08445 WP_068444579.1 1683048..1684859(-) (pepF) [Lentibacillus amyloliquefaciens strain LAM0015]
ATGGCAAACGCAGCAAAAGAACTTCCAAAAAGAGAGGAAATACCTGAAGAACGGAAATGGAAACTGGAAGATATATTTGC
AACAGATGAAGAATGGGAGAAAGAACTTGAATCCTTGAAAAAAGAATTCCCGTCTGTTGAGAAATTCCAGGGAAAAATTG
GTGACTCGGCACAAAATCTGTACGATGTCCTGAAGCTGCAGGACGAACTGTCGGAGCGGTTGGGTAAAATGTTTACATAT
GCCCACATGCGCAATGATCAGGATACGACCAATTCGAAATATCAGGCTATGGAATCCAAAGCTGAAAATGTTTTAACGAT
TGCTGCAAGTTCTATGAGCTATATCGTGCCTGAGATTCTGGGAATTGAAGAAAATAAACTGCGTGAATTTATGGAGGAAA
ATGAAGATCTGAAATTCTATGAACACGTTTTGGATGAGATTAACCGCCAACGTCCTCACGTGTTAAACGAGCGGGAAGAA
GCACTGCTTGCAGAAGCTTCTGAACCAATGTCAAGTGCGTCAAATACATTCAGCATGCTGAATAATGCCGATTTATCGTT
TCCAACGATTAAAAATGAAGATGGGGAAGACGTCGACCTGACACATGGACGCTACATCGGGTTTATGGAATCGGGTGACC
GTGAAGTCCGCAAATCAGCTTTTAAAGCGATGTATAATACGTATGATAAGTTTATTAACACGTTTGCATCGACACTCACA
GGGACAGTGAAAACGGATAATTTCAATGCTAAAATCAGAAATTATGATTCTGCCCGTCAGGCTGCTTTGGACAGCAATAA
TATTCCGGAGACTGTCTATGACAACCTTGTTGAAGCCGTTAATGAAAGACTGCCGCTTCTGCACCGCTATATGCGCTTGC
GCAAAGAAGTGCTCGATCTGGATGAACTGCATATGTATGATATTTACACACCGCTTGTCAAAGATGCTGACATGAATATT
TCATATGAACAGGCACAGCAATATGTGCTTAATGGCCTGAAACCGCTCGGAGATGATTATGTCAGTGTGCTGAAGAAAGG
GTTTGAGAGCCGCTGGATTGATGTTGACGAGAATAAAGGAAAGCGCAGCGGGGCATATTCGTCCGGTGCATATGGTACGC
ATCCGTATATTTTGCTGAATTGGCAGGATAAATTGAACGATCTGTTCACGCTGTCGCATGAGCTTGGCCACTCACTGCAC
AGCTACTACACACATAAGACACAGCCATTTCGCTACGGCAATTATTCCATTTTTGTAGCCGAGGTGGCATCAACAACAAA
TGAAGCATTGTTAAATGACTATCTGCTTAAAAATGTTGATGATGAGAAGCAAAAATTATATTTGCTGAACCATTACCTTG
AAGGTTTCCGTGGCACTGTTTTCCGTCAGACGATGTTTGCTGAATTTGAGCATGAAATCCATAAGCGTATGCAGAATGGC
GAGGCGATGACGGCGGAATCATTGACGGCGATTTACCATGACCTCAACAAGAAATACTATGGTGAAGATGTTGTTTCAGA
TGAAGAGATCGGAAAAGAGTGGGCACGGATCCCACATTTCTATATGAATTATTATGTGTACCAGTACGCAACAGGCTATT
CAGCTGCGACAACACTTGCCAATAATATTCTGAACGGTGAAGAAGGGGCAGTTGACCGTTATCTGGACTTTCTTAAAGCC
GGCAGCAGTGATTACCCGATTGAAGTGCTGAAAAAAGCTGGCGTTGACATGACAGCAAAAGCACCGATTCTCTCAGCCCT
AGATGTGTTTGAGGAAAAACTGAACGAAATGGAAGAATTGCTGTTGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-187)

Peptidase family M3 (Peptidase_M3)

(209-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U4EDI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

98.342

0.493

Multiple sequence alignment