Detailed information NTG0165248

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BARD7_RS01515
• Genome accession: NZ_CP016913
• Coordinates: 310600..311721 (+)
• Length: 373 a.a.
• NCBI ID: WP_065980644.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain RD7-7
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 305600..316721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BARD7_RS01495 (BARD7_00302)	-	305950..306945 (-)	996	WP_065980641.1	DUF5105 domain-containing protein	-
BARD7_RS19465 (BARD7_00303)	-	307073..307463 (+)	391	Protein_260	YcdB/YcdC domain-containing protein	-
BARD7_RS19470	-	307465..307611 (-)	147	Protein_261	DUF4901 domain-containing protein	-
BARD7_RS19475 (BARD7_00304)	-	307607..308431 (+)	825	Protein_262	YcdB/YcdC domain-containing protein	-
BARD7_RS01505 (BARD7_00305)	-	308632..309990 (+)	1359	WP_065980642.1	YcdB/YcdC domain-containing protein	-
BARD7_RS01510 (BARD7_00306)	-	309987..310490 (-)	504	WP_065980643.1	M15 family metallopeptidase	-
BARD7_RS01515 (BARD7_00307)	rapF	310600..311721 (+)	1122	WP_065980644.1	tetratricopeptide repeat protein	Regulator
BARD7_RS01520 (BARD7_00308)	-	311835..312614 (+)	780	WP_065980645.1	glucose 1-dehydrogenase	-
BARD7_RS01525 (BARD7_00309)	-	312696..314375 (+)	1680	WP_065980646.1	glycoside hydrolase family 13 protein	-
BARD7_RS01530 (BARD7_00310)	-	314569..315528 (+)	960	WP_065982839.1	metal ABC transporter substrate-binding protein	-
BARD7_RS01535 (BARD7_00311)	-	315583..316278 (+)	696	WP_014469701.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44324.42 Da
• Isoelectric Point: 4.9371

>NTDB_id=165248 BARD7_RS01515 WP_065980644.1 310600..311721(+) (rapF) [Bacillus amyloliquefaciens strain RD7-7]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMVDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHEKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFQQVIQAVFSLTHIYFKTERYSDAAASYARGMKSAAEWEDEIYMTKFRLIKELYQGDGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=165248 BARD7_RS01515 WP_065980644.1 310600..311721(+) (rapF) [Bacillus amyloliquefaciens strain RD7-7]
ATGAAATCCAAGATTCCATCTGAAGAAGTAGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTATTGTATTTTT
CATTGATGGAATTTAGGCATCGCATCATGGTAGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAACGGGCTGAGGAAAAACTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAAGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TATGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGTAATTTGATGGACGCCCAGCAGCATGAAAAAGCGCTGGAATACCTTGAATGCGCCTTGGAGCACGCAGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTTTGGGTGACTTTTGCAAGGCGGCG
GAAGACTTTGAACGAGCGGCTGCCGGTTTTGAAGCGCACAGCTTCCAGCAGGTCATCCAGGCTGTTTTTTCACTCACACA
TATCTACTTTAAAACGGAAAGATACAGTGACGCAGCCGCCAGCTACGCGCGGGGCATGAAAAGCGCGGCGGAGTGGGAAG
ACGAGATCTATATGACAAAATTCCGTCTGATAAAGGAGCTTTATCAGGGTGACGGCGGACAGGATTCGCTAAAAGAGTAT
TTTGACATTCTGGAATCAAAGGAACTGTTGGCTGACACTGAAGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAATTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.318	99.464	0.421
rapC	Bacillus subtilis subsp. subtilis str. 168	40.054	99.732	0.399