Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   BARD7_RS00225 Genome accession   NZ_CP016913
Coordinates   42449..43276 (+) Length   275 a.a.
NCBI ID   WP_065980525.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 37449..48276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS00200 (BARD7_00039) - 38524..39957 (+) 1434 WP_065980521.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  BARD7_RS00205 (BARD7_00040) tmk 39954..40592 (+) 639 WP_065980522.1 dTMP kinase -
  BARD7_RS00210 (BARD7_00041) darA 40663..40992 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  BARD7_RS00215 (BARD7_00042) - 41005..41445 (+) 441 WP_065980523.1 YaaR family protein -
  BARD7_RS00220 (BARD7_00043) holB 41457..42446 (+) 990 WP_065980524.1 DNA polymerase III subunit delta' -
  BARD7_RS00225 (BARD7_00044) yaaT 42449..43276 (+) 828 WP_065980525.1 competence/sporulation regulator complex protein RicT Regulator
  BARD7_RS00230 (BARD7_00045) yabA 43291..43650 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  BARD7_RS00235 (BARD7_00046) - 43710..44453 (+) 744 WP_065980526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BARD7_RS00240 (BARD7_00047) - 44440..44739 (+) 300 WP_065980527.1 GIY-YIG nuclease family protein -
  BARD7_RS00245 (BARD7_00048) rsmI 44714..45595 (+) 882 WP_065980528.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BARD7_RS00250 (BARD7_00049) abrB 45645..45935 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 31174.96 Da        Isoelectric Point: 4.6545

>NTDB_id=165240 BARD7_RS00225 WP_065980525.1 42449..43276(+) (yaaT) [Bacillus amyloliquefaciens strain RD7-7]
MYNVIGVRFKKAGKIYYFDPNGFDIEQDSCVIVETVRGVEYGQVVIANKQVDEHDVVLPLRKVIRVADERDLLIVEENKQ
EALSAFEVCQKKVAEHGLDMKLVDVEFTFDRNKVIFYFTADGRVDFRELVKDLASIFKTRIELRQIGVRDEAKMLGGIGP
CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYETAKEQLPDLGEMITTANGPAKVVGLNI
LERVLQVELKNREKVIEYTWEELLEEGVVSAQTTD

Nucleotide


Download         Length: 828 bp        

>NTDB_id=165240 BARD7_RS00225 WP_065980525.1 42449..43276(+) (yaaT) [Bacillus amyloliquefaciens strain RD7-7]
TTGTACAACGTAATAGGCGTCCGCTTTAAAAAAGCGGGAAAAATTTATTATTTTGATCCGAACGGATTTGATATAGAACA
GGACAGCTGCGTCATTGTTGAAACCGTAAGAGGTGTCGAATACGGACAGGTTGTCATCGCAAATAAACAAGTGGACGAGC
ATGATGTTGTGCTTCCGCTTCGAAAAGTCATTCGCGTTGCTGATGAACGCGATCTTCTCATTGTAGAAGAAAACAAACAA
GAGGCCCTGTCCGCTTTTGAAGTCTGTCAGAAAAAAGTGGCTGAGCACGGCTTAGATATGAAACTGGTTGATGTTGAGTT
TACGTTTGACCGCAATAAAGTCATTTTTTACTTCACAGCCGACGGACGGGTTGATTTCAGGGAATTGGTCAAAGACTTGG
CTTCTATCTTTAAAACAAGAATCGAATTGCGCCAAATCGGCGTGAGGGACGAAGCAAAAATGCTCGGCGGTATCGGCCCG
TGCGGAAGAATGCTTTGCTGCTCCACGTTCCTCGGTGATTTTGAACCGGTGTCCATCAAAATGGCGAAGGATCAAAATTT
ATCGTTGAACCCAACGAAAATTTCGGGTCTGTGCGGCCGTTTGATGTGCTGTTTGAAGTACGAAAATGATGAGTATGAGA
CGGCAAAAGAACAGCTGCCGGATTTAGGCGAAATGATTACGACGGCAAACGGCCCCGCAAAGGTTGTCGGTCTTAATATT
CTGGAACGGGTGCTTCAGGTGGAACTGAAGAATCGTGAAAAAGTGATAGAATATACTTGGGAAGAGCTCTTGGAAGAGGG
CGTCGTATCCGCACAAACCACAGATTAA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(62-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

97.091

100

0.971