Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSHJ0_RS13985 Genome accession   NZ_CP016894
Coordinates   2656455..2657582 (+) Length   375 a.a.
NCBI ID   WP_015714307.1    Uniprot ID   -
Organism   Bacillus subtilis strain HJ0-6     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2651455..2662582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSHJ0_RS13960 (BSHJ0_02750) - 2651891..2652484 (-) 594 WP_015714302.1 TetR/AcrR family transcriptional regulator -
  BSHJ0_RS13965 (BSHJ0_02751) - 2652642..2653637 (+) 996 WP_015714303.1 NADPH:quinone oxidoreductase family protein -
  BSHJ0_RS22465 - 2653925..2654057 (+) 133 Protein_2706 DUF255 domain-containing protein -
  BSHJ0_RS23225 - 2654168..2654560 (-) 393 WP_230488262.1 BclA C-terminal domain-containing protein -
  BSHJ0_RS23230 - 2654487..2654999 (+) 513 WP_231940259.1 hypothetical protein -
  BSHJ0_RS13975 (BSHJ0_02753) - 2655058..2655405 (-) 348 WP_015714305.1 DUF3992 domain-containing protein -
  BSHJ0_RS13980 (BSHJ0_02754) - 2655482..2656147 (-) 666 WP_015714306.1 CotZ-related putative spore coat protein -
  BSHJ0_RS13985 (BSHJ0_02755) rapC 2656455..2657582 (+) 1128 WP_015714307.1 response regulator aspartate phosphatase RapE Regulator
  BSHJ0_RS13990 (BSHJ0_02756) phrE 2657572..2657706 (+) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  BSHJ0_RS13995 (BSHJ0_02757) - 2657816..2657974 (+) 159 WP_003245945.1 hypothetical protein -
  BSHJ0_RS23440 - 2657938..2658228 (+) 291 WP_418910793.1 hypothetical protein -
  BSHJ0_RS14000 (BSHJ0_02758) yqcG 2658344..2659939 (+) 1596 WP_068947614.1 LXG family T7SS effector endonuclease toxin YqcG -
  BSHJ0_RS14005 (BSHJ0_02759) yqcF 2659954..2660532 (+) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  BSHJ0_RS22845 (BSHJ0_02760) - 2660650..2660796 (+) 147 WP_009967791.1 hypothetical protein -
  BSHJ0_RS14015 (BSHJ0_02761) - 2660793..2661155 (-) 363 WP_003229947.1 hypothetical protein -
  BSHJ0_RS14020 (BSHJ0_02762) - 2661171..2661650 (-) 480 WP_004399085.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44640.47 Da        Isoelectric Point: 7.5547

>NTDB_id=165190 BSHJ0_RS13985 WP_015714307.1 2656455..2657582(+) (rapC) [Bacillus subtilis strain HJ0-6]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTMPSDENRMELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=165190 BSHJ0_RS13985 WP_015714307.1 2656455..2657582(+) (rapC) [Bacillus subtilis strain HJ0-6]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTTACTGA
TGCTGAAATGTTAAAAGCTGAAATCGAACGTGATATAGAGGTTATGGAAGAAGATCAAGATTTGCTTATTTATTATCAAT
TAATGGCCTTCCGCCATAAAATCATGTTGGAATACACGATGCCATCCGATGAAAACCGAATGGAACTTTCAGAATATTTA
AAGAAAATCGAAGGGCATAAGAAGAAGCTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATATAACATCTATAAAAAACACGAGCTTTATTCTGTTCGGCGTATACAGTGCCATTTTGTCATTGCCGGTAACTA
TGATGACCTTGAAAATCATGAGAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)

Tetratricopeptide repeat (TPR_12)

(184-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384