Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   BSHJ0_RS00340 Genome accession   NZ_CP016894
Coordinates   59634..59864 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain HJ0-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54634..64864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSHJ0_RS00305 (BSHJ0_00059) ridA 54798..55175 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  BSHJ0_RS00310 (BSHJ0_00060) spoVG 55370..55663 (+) 294 WP_003218346.1 septation regulator SpoVG -
  BSHJ0_RS00320 (BSHJ0_00061) glmU 55856..57226 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  BSHJ0_RS00325 (BSHJ0_00062) prsS 57249..58202 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  BSHJ0_RS00330 (BSHJ0_00063) rplYB 58287..58901 (+) 615 WP_029726391.1 50S ribosomal protein L25/general stress protein Ctc -
  BSHJ0_RS00335 (BSHJ0_00064) pth 59008..59574 (+) 567 WP_029726390.1 aminoacyl-tRNA hydrolase -
  BSHJ0_RS00340 (BSHJ0_00065) subA/fin 59634..59864 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  BSHJ0_RS00345 (BSHJ0_00066) mfd 59934..63467 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  BSHJ0_RS00350 (BSHJ0_00067) spoVT 63603..64139 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=165092 BSHJ0_RS00340 WP_003243417.1 59634..59864(+) (subA/fin) [Bacillus subtilis strain HJ0-6]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=165092 BSHJ0_RS00340 WP_003243417.1 59634..59864(+) (subA/fin) [Bacillus subtilis strain HJ0-6]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGATTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAGGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCACATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment